PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g11050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 252aa    MW: 27964.1 Da    PI: 4.9532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g11050genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18119168356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                 ++GVr ++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a+++ + +++ge
  CA02g11050 119 FRGVRKRP-WGKWAAEIRDP-----HraQRVWLGTFITAEDAARAYDKKAIEFRGE 168
                 8*******.**********7.....338*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.446118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-31118176IPR001471AP2/ERF domain
SMARTSM003801.1E-34118181IPR001471AP2/ERF domain
CDDcd000181.49E-29119177No hitNo description
SuperFamilySSF541714.51E-21119177IPR016177DNA-binding domain
PfamPF008472.3E-10119168IPR001471AP2/ERF domain
PRINTSPR003671.3E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.3E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNDICQDSPT QDYNYTLPNK LTQNQELHYM VSALRHVVSG AGDGLADGEA AHLRHVIYGA  60
GDVLADGDAA HLLQEVQNVS GGSSTSANAM PRRSIVDSNE MELQKGGKKR RRRDTTKEFR  120
GVRKRPWGKW AAEIRDPHRA QRVWLGTFIT AEDAARAYDK KAIEFRGEKA KTNFPISEYT  180
DGVVTEQNKL PMPVVEEKKE LVQVGNVVNG DDEVGGVVVD GESSAIQNVD DFWDTLEEDG  240
LVKWITQDMF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20117176464ATERF1
3gcc_A5e-20117176464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112KKRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153551e-66AC215355.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0012A12, complete sequence.
GenBankAC2336431e-66AC233643.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankAC2336951e-66AC233695.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankHG9755141e-66HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562221.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U8FSS70.0A0A1U8FSS7_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G3A6Y20.0A0A2G3A6Y2_CAPAN; ethylene-responsive transcription factor ERF109-like
STRINGSolyc02g090790.1.15e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-28ERF domain protein 11