PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g11050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 27964.1 Da PI: 4.9532 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 119 | 168 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +g+W+AeIrdp + +r++lg+f tae+Aa+a+++ + +++ge CA02g11050 119 FRGVRKRP-WGKWAAEIRDP-----HraQRVWLGTFITAEDAARAYDKKAIEFRGE 168 8*******.**********7.....338*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.446 | 118 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 118 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 118 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-29 | 119 | 177 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-21 | 119 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-10 | 119 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MNDICQDSPT QDYNYTLPNK LTQNQELHYM VSALRHVVSG AGDGLADGEA AHLRHVIYGA 60 GDVLADGDAA HLLQEVQNVS GGSSTSANAM PRRSIVDSNE MELQKGGKKR RRRDTTKEFR 120 GVRKRPWGKW AAEIRDPHRA QRVWLGTFIT AEDAARAYDK KAIEFRGEKA KTNFPISEYT 180 DGVVTEQNKL PMPVVEEKKE LVQVGNVVNG DDEVGGVVVD GESSAIQNVD DFWDTLEEDG 240 LVKWITQDMF F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 117 | 176 | 4 | 64 | ATERF1 |
3gcc_A | 5e-20 | 117 | 176 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | KKRRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215355 | 1e-66 | AC215355.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0012A12, complete sequence. | |||
GenBank | AC233643 | 1e-66 | AC233643.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence. | |||
GenBank | AC233695 | 1e-66 | AC233695.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence. | |||
GenBank | HG975514 | 1e-66 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562221.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1U8FSS7 | 0.0 | A0A1U8FSS7_CAPAN; Ethylene-responsive transcription factor | ||||
TrEMBL | A0A2G3A6Y2 | 0.0 | A0A2G3A6Y2_CAPAN; ethylene-responsive transcription factor ERF109-like | ||||
STRING | Solyc02g090790.1.1 | 5e-76 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 3e-28 | ERF domain protein 11 |