PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g10530
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 829aa    MW: 91565.8 Da    PI: 6.2741
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g10530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.2e-17563357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++p+  +r +L +++    +++ +q+kvWFqNrR +ek+
  CA02g10530  5 KYVRYTPEQVEALERVYAECPKPTSIKRHQLIRECsilsNVDPKQIKVWFQNRRCREKQ 63
                6789*****************************************************97 PP
2bZIP_121.64.8e-0757981859
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
                rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v+ l
  CA02g10530 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKQVSHL 98
                9*************************************9977 PP
3START168.93.4e-531533572204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv++  +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++ ++
  CA02g10530 153 IAEETLAEFLSKATGTAVDWVQMIGMKPGPESIGIVTVSRNCDGVAARACGLVSLEPM-KVAEILKDRPSWYHDCRCLDILSVIPTGkgGTIELIYLQT 250
                 68999*****************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktw 196
                 +a+++l++ Rdf+++Ry+ +l++g++vi+++S+++++  p   s+vRa++lpSg+li+p ++g+s +++v+h+dl++ +++++lr+l++s+ + ++k++
  CA02g10530 251 YAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTPTTGGPPATSSVRATMLPSGYLIRPFEGGGSIIHIVDHIDLDACSVPEVLRPLYESSKILAQKMT 349
                 ***************************************99********************************************************** PP

                 HHHTXXXX CS
       START 197 vatlqrqc 204
                 +a++++ +
  CA02g10530 350 MAAFRYVR 357
                 ***99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.24164IPR001356Homeobox domain
SMARTSM003891.1E-15268IPR001356Homeobox domain
CDDcd000868.01E-16565No hitNo description
PfamPF000468.0E-15563IPR001356Homeobox domain
SuperFamilySSF466897.7E-17669IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-18760IPR009057Homeodomain-like
CDDcd146861.40E-65796No hitNo description
Gene3DG3DSA:1.20.5.1700.0016198No hitNo description
PROSITE profilePS5084825.755143368IPR002913START domain
CDDcd088751.76E-66149360No hitNo description
Gene3DG3DSA:3.30.530.203.0E-20151340IPR023393START-like domain
SMARTSM002343.2E-49152359IPR002913START domain
SuperFamilySSF559615.91E-34153361No hitNo description
PfamPF018529.9E-51153358IPR002913START domain
PfamPF086706.8E-47684827IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MDTSKYVRYT PEQVEALERV YAECPKPTSI KRHQLIRECS ILSNVDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY DNGYMRQQLH TVNSTTTDTC  120
CETVVVSGQQ QQQNPMAQHP QRDVNSPTGL LAIAEETLAE FLSKATGTAV DWVQMIGMKP  180
GPESIGIVTV SRNCDGVAAR ACGLVSLEPM KVAEILKDRP SWYHDCRCLD ILSVIPTGKG  240
GTIELIYLQT YAPTTLASAR DFWTLRYTTS LEDGSLVICE RSLTPTTGGP PATSSVRATM  300
LPSGYLIRPF EGGGSIIHIV DHIDLDACSV PEVLRPLYES SKILAQKMTM AAFRYVRQIA  360
QETNGEIQYV GGRQPAALRA FSQRLCRGFN NAVSGFIDDG WTIMDNDGLE DVTIAVNSSP  420
NKFLDAQYNT LSILPTFGGV LCARASMLLQ DVCPALLVRF LREHRSEWAD YGVDAYSSAS  480
LKASPYAVPC ARPGVFPSSQ VILPLAQTVE HEEFLEVVRL EGHAFSPENI ALSRDMYLLQ  540
LCSGIEENAT GACAQLVFAH IDESFGDDAP LLPSGFSVIP LEPKSDSPIA ARTLDLASTL  600
EARTGGTRPA GEVEGSKYNH RSVLTIAFQF TFENHYRENV AAMARQYVRN IVGSVQRVAM  660
AIAPSRLCSQ MTPKCFPGSP EAITLARWIC KSYKVHTGGE LLQVDSQAAG DAVLKQLWHH  720
TDSIMCCSVK MNVIFSFANQ AGLDMLETTL IALQDIMLDK ILDEAGRKIL LSEFPKIMQQ  780
GFAYLPAGLC VSSMGRPVSY EQAVAWKVLN DDNANYCLAF MFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559374.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1U8FUI30.0A0A1U8FUI3_CAPAN; homeobox-leucine zipper protein ATHB-14 isoform X2
STRINGSolyc02g069830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]