PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g09250

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 286aa MW: 30503.8 Da PI: 8.2634

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g09250	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.4	4.4e-37	44	138	7	89
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............k 89 + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ +a++ +s+++ s s+ + CA02g09250 44 KRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALSAAAAVSQQGISVSAglvdesgeniagS 138 689*************************************************************8886666666666222224543333333321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-33	44	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.256	45	99	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDPNQPNFIN TSNNNIIIIK HADDQVKDDE IKKQQQQKQV AVPKRKDRHT KVEGRGRRIR 60 MPALCAARIF QLTRELGHKS DGETIQWLLQ QAEPSIIAAT GTGTIPASAL SAAAAVSQQG 120 ISVSAGLVDE SGENIAGSDS NRGSSNNRRT SWPMICGNLG RPHSASTGIW PAPPPVVTSF 180 GYQSSSAASS SSLGSESSNY YLQKIGFPGF DLPAATNMNP MSFTSILGGS NQQLPGLELG 240 LSQEGHIGVL NSQALNHIYA RMQHPQQDQQ NQQQSPANDS QGSGH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ896308	0.0	HQ896308.1 Solanum tuberosum clone RH066A20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559149.1	0.0	PREDICTED: transcription factor TCP20-like
Refseq	XP_016559150.1	0.0	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	4e-67	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1U8FKA1	0.0	A0A1U8FKA1_CAPAN; transcription factor TCP20-like
TrEMBL	A0A1U8FTV3	0.0	A0A1U8FTV3_CAPAN; Transcription factor TCP20
STRING	Solyc02g068200.1.1	1e-121	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-56	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]