PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g08550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 280aa MW: 31697.2 Da PI: 6.1043 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k CA02g08550 78 KKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 131 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 77 | 168 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el CA02g08550 77 EKKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKQLHSELL 168 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-18 | 74 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-18 | 76 | 137 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.163 | 77 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-15 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.74E-16 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00486 | 124 | 167 | No hit | No description |
Pfam | PF02183 | 3.8E-15 | 133 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MLFSKTGTMA FVPGAPEEND LPPSFPGVFP PPCAPHQEFQ GISSVLMRRA MSFDHQDSRA 60 DDIDMSDDDG SSQLLGEKKR RLNMEQVKAL ERSFEIGNKL EPERKMQLAR ALGLKPRQIA 120 IWFQNRRARC KTKQLEKDYE ILKRQCDKLK SDNDALKTQN KQLHSELLTL SNRESAGGGT 180 TILFNLNKEN EGSNWNNGSG DENSTIIDVN LGTTTRTSST NSPHNNNNNN NHDHVFPTSA 240 NYKIEEQTHV PEEGYCNLFN NVVEDQTNYW PLPVQQHFY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARCKTKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-154 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561920.1 | 1e-172 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
TrEMBL | A0A2G3A638 | 0.0 | A0A2G3A638_CAPAN; Homeobox-leucine zipper protein HOX21 | ||||
STRING | Solyc02g067410.1.1 | 1e-150 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-48 | HD-ZIP family protein |