PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g08280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 208aa MW: 23392.1 Da PI: 10.5373 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.3 | 2e-28 | 38 | 105 | 2 | 69 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69 g+kdrhsk+ T++g+RdRR+Rls+++a +++ Lqd+LG+d++sk i+WLl++ak+ i +l+ + ++ CA02g08280 38 FGGKDRHSKVLTAKGLRDRRIRLSVPTALQLYVLQDKLGLDQPSKVIDWLLNEAKHDIYQLPPHQMPP 105 689**********************************************************9995555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.598 | 40 | 98 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-27 | 40 | 103 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MTTGEVDPRD NVTKTPKKSS TSWTRFKDPR IVRVARAFGG KDRHSKVLTA KGLRDRRIRL 60 SVPTALQLYV LQDKLGLDQP SKVIDWLLNE AKHDIYQLPP HQMPPIGREG LPLNELLKLK 120 RPSNALTGLR KDKDPQVLLE GVQRATQMMI DSDEEATKRV LPNLDLINLL KGNSNSSIFN 180 FGLHQTDFFS RSGICNFNII PYVGVII* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-17 | 45 | 99 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-17 | 45 | 99 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC246813 | 2e-80 | AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence. | |||
GenBank | HG975514 | 2e-80 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561903.1 | 1e-135 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
TrEMBL | A0A2G3A5K7 | 1e-136 | A0A2G3A5K7_CAPAN; Transcription factor TCP17 | ||||
STRING | PGSC0003DMT400068332 | 1e-55 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-37 | plastid transcription factor 1 |