PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g07700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 24961.9 Da PI: 4.7278 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.9 | 2.1e-14 | 9 | 87 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +pk+fa+++ ++ ++ + le +sg++Wev++ + + g+++l+kGW++F++ + g f++F+++ rs +v +f+ CA02g07700 9 CTQKIPKDFASRYCKNMLNP--VYLEVPSGEVWEVEV--EHSEGQMWLSKGWQDFCDYYSISCGHFLMFEYNARSHY--NVIIFD 87 5568*********5454444..***************..99999**************************9876555..676665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.266 | 1 | 89 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-6 | 1 | 89 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.93E-15 | 7 | 87 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-18 | 7 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-19 | 8 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-11 | 11 | 86 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MKLSPDFLCT QKIPKDFASR YCKNMLNPVY LEVPSGEVWE VEVEHSEGQM WLSKGWQDFC 60 DYYSISCGHF LMFEYNARSH YNVIIFDLSA AEIEYPYSSA YGIRTIHCQG THHAPSTDRP 120 ESDDSVDILE GIPRSQKLKE KNPDLVERSL DNKGHCPLGQ SSKRKRHDGD TEDDISIDMH 180 IKRMEVEKSQ EDIDFPSFTR EGQSEDLICY LSYWL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622351.1 | 1e-101 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
Refseq | XP_016472696.1 | 1e-101 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X5 | ||||
TrEMBL | A0A2G2XCE0 | 1e-150 | A0A2G2XCE0_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G3D324 | 1e-150 | A0A2G3D324_CAPCH; Uncharacterized protein | ||||
STRING | XP_009622351.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-18 | B3 family protein |