PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g06980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 822aa    MW: 92781.9 Da    PI: 9.2635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g06980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-121499296
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                fk+ + ++++k   l +p +f+ ++g +      + le ++g  Wevkl  +++ g+ +l++GW++F +   +  g f++F+++g+s f   v +
  CA02g06980 14 FKIILFPHSSK---LHIPDEFVMKYGAD--LRDLVFLEVPTGAIWEVKL--QNSNGMKWLKEGWNKFKEYYSIGCGYFLLFQYKGNSHF--SVFI 99
                55555555555...56*********977..555899999**********..**********************************9999..5555 PP
2B353.93.3e-17720816199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+  + p++v+++ +l +p +f++++  +  e++ + l+ ++gr W+ kl   ++s+  + ++GW++Fv  n Lke D++vF+l +++e  l v++fr+
  CA02g06980 720 FIVSMQPAYVSQNFQLDIPVNFFKKYIRE--EETIVNLRVSNGRIWRAKLFNIQSSCVKIQASGWRDFVLGNSLKEHDTCVFELFEDTEPVLDVTIFRA 816
                 778899********************544..4568***************778888888889*********************9988777788998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.64610103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1810103IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-1311101No hitNo description
SuperFamilySSF1019361.12E-1912110IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-91399IPR003340B3 DNA binding domain
SMARTSM010191.2E-1013103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-19715815IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-20717816IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-18718815No hitNo description
PROSITE profilePS5086313.183720817IPR003340B3 DNA binding domain
PfamPF023623.6E-15720816IPR003340B3 DNA binding domain
SMARTSM010195.4E-15720817IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MVKRRLKKMS RQFFKIILFP HSSKLHIPDE FVMKYGADLR DLVFLEVPTG AIWEVKLQNS  60
NGMKWLKEGW NKFKEYYSIG CGYFLLFQYK GNSHFSVFIF DLSASEIEYP SGPNEDITPE  120
KFVNLVGDAS HRKKTQKNAC DDDFLRNKTA KVADRSYSER EKSVIQVSHP SCPPERQEPN  180
RVKLEKPDVE EDLDCATQND KEKLLKLNME KNLYCAADKG NGHCNEVLDP SASKMANTTK  240
CTKRKYSISL EASGRSYPLR SKQVKLEQSK GNGSPSYSVK QRSSTPVPCC SLQRSSTPVP  300
CCGTQSERKE STEVQLEKAN TEEDFCCAVQ LEKANSEEDL CCVPKAKRVE TNMEKLVKQG  360
HCNEVPVVVA LVSKVTTINQ HSKQKTITSL DASICRYPLR SKQVKDVKTE NGGVEEHCSK  420
IPVVDPSVIK KTTTNQHSKQ KTTTSLDASI CRYPLRSKQV KDVKTEIGDV EEHCSKIPVV  480
DPLVIKKTTT NQHHEKKTSV SLDTSHCRYP LRSQQLKEVK LGKPNAEEDL LSVAQKAKMK  540
KANNVKLEKG DVEECNKEMP VGDPSTTKKK TTNRHHQKKT SFSLDTSHCR YPLRSKQLDE  600
VKLGQWEAGG NIHNKLPKKT VAADSSYCKT QNSGLPAPSR SFKPIRVKLE KPDNLFCAAK  660
KAEGKETINV KLETGDMEGN LNSASYKGTD STSSEMTRLG KKKMLPSEKH NWGNYCNPHF  720
IVSMQPAYVS QNFQLDIPVN FFKKYIREEE TIVNLRVSNG RIWRAKLFNI QSSCVKIQAS  780
GWRDFVLGNS LKEHDTCVFE LFEDTEPVLD VTIFRAMTPA S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557939.10.0PREDICTED: uncharacterized protein LOC107857615 isoform X1
TrEMBLA0A1U8FQB00.0A0A1U8FQB0_CAPAN; uncharacterized protein LOC107857615 isoform X1
STRINGPGSC0003DMT4000376880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein