PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g06450

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 578aa MW: 66017.3 Da PI: 4.9153

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g06450	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.7e-56	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewy+Fs+rd+ky++g+r+nratk+gyWkatgkd++v s + CA02g06450 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPdKsLLPSKDMEWYYFSPRDRKYPNGTRTNRATKAGYWKATGKDRKVNS-QM 102 79**************************.99**********96435566888*********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 + +g+kktLv+y+grap+g++t Wvmheyrle CA02g06450 103 RPIGMKKTLVYYRGRAPHGTRTGWVMHEYRLE 134 9***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.007	6	156	IPR003441	NAC domain
Pfam	PF02365	2.4E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSLLPSK 60 DMEWYYFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS QMRPIGMKKT LVYYRGRAPH 120 GTRTGWVMHE YRLEERECEV ANGLQDAYAL CRVFKKSLNA PKSGDHYASD RSSSINDQFY 180 TEGRGDDYES PDYGMPPSAT TSSSMLLHGS PLMHVAGPST DDKWMQYLSD EAFTFNNPSF 240 PSTNEAFPYH PSKVDIALEC ARLQHRFALP PLEVQDFPQV GYMMSQSNDV MYHQGTTHQT 300 DIVQEILSVD QASHDLTNQD SWAGNYNINY EDPSDDFSFL PHNNNQIHHD LDDSFNFMEQ 360 LKAEDDQDNA RCIAIGDFDE DFKSESMVER LRWVGMSEKD DKTFHEDYKA VPIENILGPH 420 KEEQDQLQGE SSGQHNNFNE TEANNFSLGF SNDDNLLDDE DTDGFSSSPS FEVYEKIELS 480 QGMFIATRQA ANTFYHQVAP SKTVAIHRDL VTTVHDLPIR KITKSATFLD TFMEFSRKTL 540 SGVVMKVTRS NWRGTVLSTL VELIALLHTF WSMLGNA*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSLLPSK  60
DMEWYYFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS QMRPIGMKKT LVYYRGRAPH  120
GTRTGWVMHE YRLEERECEV ANGLQDAYAL CRVFKKSLNA PKSGDHYASD RSSSINDQFY  180
TEGRGDDYES PDYGMPPSAT TSSSMLLHGS PLMHVAGPST DDKWMQYLSD EAFTFNNPSF  240
PSTNEAFPYH PSKVDIALEC ARLQHRFALP PLEVQDFPQV GYMMSQSNDV MYHQGTTHQT  300
DIVQEILSVD QASHDLTNQD SWAGNYNINY EDPSDDFSFL PHNNNQIHHD LDDSFNFMEQ  360
LKAEDDQDNA RCIAIGDFDE DFKSESMVER LRWVGMSEKD DKTFHEDYKA VPIENILGPH  420
KEEQDQLQGE SSGQHNNFNE TEANNFSLGF SNDDNLLDDE DTDGFSSSPS FEVYEKIELS  480
QGMFIATRQA ANTFYHQVAP SKTVAIHRDL VTTVHDLPIR KITKSATFLD TFMEFSRKTL  540
SGVVMKVTRS NWRGTVLSTL VELIALLHTF WSMLGNA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246741	1e-112	AC246741.6 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-55o9 map 2, complete sequence.
GenBank	AC246898	1e-112	AC246898.4 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-34k8 map 2, complete sequence.
GenBank	HG975441	1e-112	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-112	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561809.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A1U8G1F3	0.0	A0A1U8G1F3_CAPAN; NAC domain-containing protein 53
TrEMBL	A0A2G3A4G3	0.0	A0A2G3A4G3_CAPAN; NAC domain-containing protein 86-like
STRING	PGSC0003DMT400055322	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-143	NAC domain containing protein 28