PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g05950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 19343.6 Da PI: 9.857 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+ +++ +g+W+AeIrdp+ + r++ g+f taeeAa+a++ +k+++g CA02g05950 55 QYRGIKQKP-WGKWAAEIRDPR----KeVRVWMGTFNTAEEAARAYDVKAKRIKG 104 69****999.**********84....35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.906 | 55 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-31 | 55 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-30 | 55 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-20 | 55 | 114 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.30E-29 | 55 | 113 | No hit | No description |
PRINTS | PR00367 | 5.8E-11 | 56 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 56 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-11 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
DDFKEFSDDE DDVEVDVKPF SFSAPKKSTG SKYVKVINSD KDAANRSSKR KRKNQYRGIK 60 QKPWGKWAAE IRDPRKEVRV WMGTFNTAEE AARAYDVKAK RIKGSKAKVN FPDEAPSPAS 120 RHSVQLNPQN GLPKESLDSV PSDSTIMNSV GDGYYDSLGF PKRETHDKAV CI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 55 | 112 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-20 | 55 | 112 | 5 | 63 | ATERF1 |
3gcc_A | 1e-20 | 55 | 112 | 5 | 63 | ATERF1 |
5wx9_A | 8e-20 | 54 | 114 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562444.1 | 1e-97 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
Refseq | XP_016562445.1 | 7e-98 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2 | ||||
Swissprot | Q6K7E6 | 3e-37 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2G3A4D0 | 1e-116 | A0A2G3A4D0_CAPAN; Ethylene-responsive transcription factor 1 | ||||
STRING | PGSC0003DMT400023609 | 8e-79 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 5e-34 | ethylene-responsive element binding protein |