PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g05360

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 693aa MW: 71380.5 Da PI: 8.0677

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g05360	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CA02g05360 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	16.7	2.1e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H++ + CA02g05360 132 WKCDKCSKNYAVQSDLKAHLKIC 154 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.4E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	56	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	97	127	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-5	120	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.11E-6	128	169	No hit	No description
SMART	SM00355	65	132	152	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MNDCVGSGEV SVSSSGDQAA HCKEGGKKKR NLPGMPDPNA EVIALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRESN EVRKRVYVCP EPTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKN YAVQSDLKAH LKICGTKQYK CDCGTMFSRR DSFITHRAFC 180 DVLAKDREKA QDAVTTPISD EDHKVQAVVS STPSPSTPPT PPPSSEPPAV PSPAAPESLL 240 PPVTPSTAVV SSDCPIQNSE LVESPRTNSD GTITKQFMEE TKAKSSLSGI CRSSSSIGCT 300 NINRLASLTG ICSNSSMSSS SKGSTSSSSI FPSLTGICSS TRSSSSNGST SSISVFPSLT 360 GVCSSNRSSS SNVSTSSISI FPSLTGICSS SRSLSSNVST GSISVFPSLT GISSSSRSLS 420 SNGSTPSSSI FASSTGFCSS SSSLSCNRST SSSSNFSSLN GIGSSSSSSN SNGSASCSSF 480 ASLFASSTAS GSLPSQAPHF TDWFQSVAPA PPPDIEPPSS MEPISLCLAM NYGSSVFGPT 540 GQEGMQYAAA PQPAMSATAL LQKAALMGAT STNSSLLRGL GILSSSSSSS GQHEWSGRQI 600 DTDGATVAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT LDLLGLGMAA GGGPTPGLSA 660 LITSMGGNLD VAAAAGPFDS GEFCGEELRR GS*

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MNDCVGSGEV SVSSSGDQAA HCKEGGKKKR NLPGMPDPNA EVIALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRESN EVRKRVYVCP EPTCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKN YAVQSDLKAH LKICGTKQYK CDCGTMFSRR DSFITHRAFC  180
DVLAKDREKA QDAVTTPISD EDHKVQAVVS STPSPSTPPT PPPSSEPPAV PSPAAPESLL  240
PPVTPSTAVV SSDCPIQNSE LVESPRTNSD GTITKQFMEE TKAKSSLSGI CRSSSSIGCT  300
NINRLASLTG ICSNSSMSSS SKGSTSSSSI FPSLTGICSS TRSSSSNGST SSISVFPSLT  360
GVCSSNRSSS SNVSTSSISI FPSLTGICSS SRSLSSNVST GSISVFPSLT GISSSSRSLS  420
SNGSTPSSSI FASSTGFCSS SSSLSCNRST SSSSNFSSLN GIGSSSSSSN SNGSASCSSF  480
ASLFASSTAS GSLPSQAPHF TDWFQSVAPA PPPDIEPPSS MEPISLCLAM NYGSSVFGPT  540
GQEGMQYAAA PQPAMSATAL LQKAALMGAT STNSSLLRGL GILSSSSSSS GQHEWSGRQI  600
DTDGATVAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT LDLLGLGMAA GGGPTPGLSA  660
LITSMGGNLD VAAAAGPFDS GEFCGEELRR GS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-29	128	186	3	61	Zinc finger protein JACKDAW
5b3h_F	8e-29	128	186	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174607	0.0	AC174607.1 Solanum lycopersicum, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016558668.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-111	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1U8FQQ0	0.0	A0A1U8FQQ0_CAPAN; Protein indeterminate-domain 1
TrEMBL	A0A2G3A4C5	0.0	A0A2G3A4C5_CAPAN; protein indeterminate-domain 2-like
STRING	PGSC0003DMT400040064	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-106	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]