PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g04820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 36730.9 Da PI: 6.2601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.2 | 8.3e-50 | 36 | 163 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kge 98 pGfrFhPtdeelv +yL++kve+k++ l ++ik++diyk++PwdLp+ ++++kewyf++kr +ky+++ r+nr ++ sg+Wkatg dk+++s+ +g+ CA02g04820 36 LPGFRFHPTDEELVGFYLRRKVEKKPIGL-DIIKQIDIYKYDPWDLPSINNNGDKEWYFYCKRGRKYKNSIRPNRvTAGSGFWKATGIDKPIYSSnDGK 133 69*************************99.99***************77778999********************5556**************997788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+ykg+a kg+ktdW mhe+rl CA02g04820 134 CIGLKKSLVYYKGTAGKGTKTDWQMHEFRL 163 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.841 | 35 | 196 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-54 | 35 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-24 | 37 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MMEVEKKSSS SSIVTNNYCN KGIDDDDDDD DDDVVLPGFR FHPTDEELVG FYLRRKVEKK 60 PIGLDIIKQI DIYKYDPWDL PSINNNGDKE WYFYCKRGRK YKNSIRPNRV TAGSGFWKAT 120 GIDKPIYSSN DGKCIGLKKS LVYYKGTAGK GTKTDWQMHE FRLPSQNDAH TSTKHLHADT 180 IPQEAETWTL CRILKRNASY RKPIQDWKEV AIRQQNDPVV NMDALSSKIC SNNNKDSPSN 240 NNSQIYISFS TTPVVKQQPL IDYGYIKPNN QEFVGQQSNE SALSTAAASS NSTSPVDFNE 300 WLEHGNWNEL TSIIELNCDP LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-48 | 37 | 202 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-48 | 37 | 202 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-48 | 37 | 202 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-48 | 37 | 202 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-48 | 37 | 202 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-48 | 37 | 202 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-48 | 37 | 202 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561983.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A2G3A6R1 | 0.0 | A0A2G3A6R1_CAPAN; Putative NAC domain-containing protein 94 | ||||
STRING | Solyc02g069960.2.1 | 1e-145 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 8e-71 | NAC domain containing protein 42 |