PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g04820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 323aa    MW: 36730.9 Da    PI: 6.2601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g04820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.3e-50361632128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kge 98 
                  pGfrFhPtdeelv +yL++kve+k++ l ++ik++diyk++PwdLp+  ++++kewyf++kr +ky+++ r+nr ++ sg+Wkatg dk+++s+ +g+
  CA02g04820  36 LPGFRFHPTDEELVGFYLRRKVEKKPIGL-DIIKQIDIYKYDPWDLPSINNNGDKEWYFYCKRGRKYKNSIRPNRvTAGSGFWKATGIDKPIYSSnDGK 133
                 69*************************99.99***************77778999********************5556**************997788 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +glkk+Lv+ykg+a kg+ktdW mhe+rl
  CA02g04820 134 CIGLKKSLVYYKGTAGKGTKTDWQMHEFRL 163
                 8***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.84135196IPR003441NAC domain
SuperFamilySSF1019414.05E-5435196IPR003441NAC domain
PfamPF023653.5E-2437163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MMEVEKKSSS SSIVTNNYCN KGIDDDDDDD DDDVVLPGFR FHPTDEELVG FYLRRKVEKK  60
PIGLDIIKQI DIYKYDPWDL PSINNNGDKE WYFYCKRGRK YKNSIRPNRV TAGSGFWKAT  120
GIDKPIYSSN DGKCIGLKKS LVYYKGTAGK GTKTDWQMHE FRLPSQNDAH TSTKHLHADT  180
IPQEAETWTL CRILKRNASY RKPIQDWKEV AIRQQNDPVV NMDALSSKIC SNNNKDSPSN  240
NNSQIYISFS TTPVVKQQPL IDYGYIKPNN QEFVGQQSNE SALSTAAASS NSTSPVDFNE  300
WLEHGNWNEL TSIIELNCDP LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-483720219171NO APICAL MERISTEM PROTEIN
1ut4_B3e-483720219171NO APICAL MERISTEM PROTEIN
1ut7_A3e-483720219171NO APICAL MERISTEM PROTEIN
1ut7_B3e-483720219171NO APICAL MERISTEM PROTEIN
3swm_A3e-483720222174NAC domain-containing protein 19
3swm_B3e-483720222174NAC domain-containing protein 19
3swm_C3e-483720222174NAC domain-containing protein 19
3swm_D3e-483720222174NAC domain-containing protein 19
3swp_A3e-483720222174NAC domain-containing protein 19
3swp_B3e-483720222174NAC domain-containing protein 19
3swp_C3e-483720222174NAC domain-containing protein 19
3swp_D3e-483720222174NAC domain-containing protein 19
4dul_A3e-483720219171NAC domain-containing protein 19
4dul_B3e-483720219171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561983.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A2G3A6R10.0A0A2G3A6R1_CAPAN; Putative NAC domain-containing protein 94
STRINGSolyc02g069960.2.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-71NAC domain containing protein 42