PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g04500
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 364aa    MW: 40967 Da    PI: 6.3005
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g04500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.97.5e-34861901103
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaksaa 95 
                 a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l +   +s+s+c++ +s+ + s+++++    ++ ++++
  CA02g04500  86 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLINEAKAAIDALGEF--PSNSHCTKLNSKMQCSFDQQQnprfSSVSNTE 182
                 589***********************************************************999..66666955555555554444433543333333 PP

         TCP  96 kskksqks 103
                 ++ +++++
  CA02g04500 183 CGVQDNQQ 190
                 33333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3087197IPR005333Transcription factor, TCP
PROSITE profilePS5136930.2389147IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNHQLQVSDE EEEEEEAFQE NGIENLQSHY QNQHIQQLPQ PLCPKPAKWA NFTACEQELN  60
KVTEQMKPKR AKMDVIEVHG GRIIRATGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDV  120
QDRLGYDRPS KAIDWLINEA KAAIDALGEF PSNSHCTKLN SKMQCSFDQQ QNPRFSSVSN  180
TECGVQDNQQ EVNYDIPIQN VNLFPSSDGS KNPFFSEFHS YPNVHFLNFQ SLQDNTILSS  240
SNHHQGSFST TTSIPLNSNM EMARFRRSLN ENIASSNSRN GEVGEDSSLN HLAHHFPSVL  300
SQNQVFSHRE PLQSSIFPLT RDPLSTQHHT LSYGFANDGF SGVTSSAPRI QGEEEQGTMF  360
SAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1994147154Putative transcription factor PCF6
5zkt_B1e-1994147154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562041.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1U8FS930.0A0A1U8FS93_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A6T40.0A0A2G3A6T4_CAPAN; transcription factor TCP4-like
TrEMBLA0A2G3D5R70.0A0A2G3D5R7_CAPCH; Transcription factor PCF5
STRINGPGSC0003DMT4000591171e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.13e-37TCP domain protein 10