PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g04020
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 349aa    MW: 39391 Da    PI: 7.3625
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g04020genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-08149955
         AP2  9 dkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                ++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  CA02g04020  1 HRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 49
                789**********66667777755555********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.343157IPR001471AP2/ERF domain
PfamPF008471.2E-4149IPR001471AP2/ERF domain
SMARTSM003801.0E-10163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-8258IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-10258IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY DEEEAAARAY DLAALKYWGP GTLINFPVTD  60
YSRDLEEMQN VSREDYLASL RRKSGGFSRG ISKYRPLSSR WDLQFGRVPG ADYFNSLHYG  120
EHSDNATVDN EYIDGFCMDR KIDLSSYIKW WVGNKARQTD SHVKMSEEAK VGCPEDIDNE  180
LRASELSIQQ TEPYEMPRLG VFQGKKNHKS STLSAMSILS QSAAYKSFQE KVAKKKEKVE  240
NDENENKSTI NRVDRGKMIE KSSPDSGSEK LGAAFLNAGG LSINRNLHPL TPLLSAPLLT  300
NYNSIDPLTD PVLWTSLVPN FHIGSSRPTE VSFSHQSLVY LVLHILSV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558562.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK21e-115AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2G3A5620.0A0A2G3A562_CAPAN; AP2-like ethylene-responsive transcription factor
TrEMBLA0A2G3D2M50.0A0A2G3D2M5_CAPCH; AP2-like ethylene-responsive transcription factor
STRINGSolyc02g030210.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-93AP2 family protein