PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g03800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GeBP | ||||||||
Protein Properties | Length: 236aa MW: 27253.8 Da PI: 9.7475 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 81 | 1.7e-25 | 50 | 138 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 fqr wsee ei++LqG +++ ++++ps++ af fvk+ ++ + +k+ql K+ rLK+K+k++ k +fsk+hd+k f+ls+kiWg CA02g03800 50 FQRAWSEEEEIAILQGYLNYSFLKNSEPSSNYGAFLTFVKDDLQTETNKTQLQHKLTRLKRKYKRNIGK------RKFSKSHDEKLFKLSEKIWG 138 9********************************************************************......89*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.4E-24 | 50 | 138 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAARNIFKSL KAKRPHGDSD KEWTPSPEDS QTYSPEEVIM ESSNVNKSGF QRAWSEEEEI 60 AILQGYLNYS FLKNSEPSSN YGAFLTFVKD DLQTETNKTQ LQHKLTRLKR KYKRNIGKRK 120 FSKSHDEKLF KLSEKIWGEV DKVRNKVDKT SGKMIVDASR SEMSWDFVLN GGTSADLEDW 180 FRRNPRQLIS EKERNEMLEK SQSVKVAKAR QYLLEIQVME EQAKMATDAI QAILS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561813.1 | 1e-171 | PREDICTED: uncharacterized protein LOC107860847 | ||||
TrEMBL | A0A2G3A4L2 | 1e-173 | A0A2G3A4L2_CAPAN; Uncharacterized protein | ||||
STRING | XP_009763764.1 | 7e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 1e-19 | DNA-binding storekeeper protein-related transcriptional regulator |