PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g03060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 21160.5 Da PI: 10.4008 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.2 | 7.4e-45 | 39 | 165 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 pGfrFhPt+eel+++yLk+ ++++kl+ +vi ++iy ++Pw+Lp +k +e+ewyfF++ ++k+ + ++nr+t++g+Wkatg+d+++ s ++ CA02g03060 39 PGFRFHPTEEELINFYLKRIIDDNKLDS-NVIGFLNIYLSDPWELPGLAKPGEREWYFFVPINRKHGPKGKPNRTTRNGFWKATGSDRPIRSYldPKKI 136 9*************************99.99***************8888899*************************************998878889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy grapkg++tdWvm+eyrl CA02g03060 137 IGLKKTLVFYGGRAPKGSRTDWVMNEYRL 165 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-50 | 37 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.116 | 37 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 39 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSAKQDKSFG LYKRLLNLCS HKHTVREKKK MSPAELELPG FRFHPTEEEL INFYLKRIID 60 DNKLDSNVIG FLNIYLSDPW ELPGLAKPGE REWYFFVPIN RKHGPKGKPN RTTRNGFWKA 120 TGSDRPIRSY LDPKKIIGLK KTLVFYGGRA PKGSRTDWVM NEYRLPDEHK VFSCAKTEFK 180 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-41 | 28 | 165 | 5 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 4e-87 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 4e-87 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016558599.1 | 1e-101 | PREDICTED: putative NAC domain-containing protein 94 isoform X2 | ||||
Swissprot | Q10S65 | 5e-68 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A2G3D2P0 | 1e-119 | A0A2G3D2P0_CAPCH; Putative NAC domain-containing protein 94 | ||||
STRING | Solyc02g061780.2.1 | 4e-87 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3531 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-66 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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