PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g01550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Dof | ||||||||
Protein Properties | Length: 193aa MW: 20827.4 Da PI: 9.0739 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.5e-39 | 26 | 85 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+ CA02g01550 26 PDQQLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDIPIGGGSRKNAKR 85 7899****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-27 | 25 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-34 | 27 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.32 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTLEASEKRV TKQQTAGGVL PPAQEPDQQL PCPRCDSTNT KFCYYNNYNL SQPRHFCKSC 60 RRYWTHGGTL RDIPIGGGSR KNAKRCRIYT STPFSSSTAV SPHGNSPFLV PLPTANQLLY 120 GSDVKPCLNM SGNNFTSLLS SHGPTGVLAL GGIEDVSFSI GRAAVWPFPG APDSFIRNYD 180 SGVGASMWQF SG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554611.1 | 1e-142 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 1e-39 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A2G3A5P4 | 1e-141 | A0A2G3A5P4_CAPAN; Dof zinc finger protein PBF | ||||
STRING | PGSC0003DMT400034111 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 4e-42 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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