PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g01120
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 471aa    MW: 51577.1 Da    PI: 4.7688
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g01120genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-39117176261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  CA02g01120 117 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 176
                 7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-30110174IPR003851Zinc finger, Dof-type
PfamPF027011.1E-31119175IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.789121175IPR003851Zinc finger, Dof-type
PROSITE patternPS013610123159IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSELKDPAIK LFGRTIQLPD VPDSSETMLE DSLPEEANGE EEDVEDQKDN IGGNLDDEED  60
EMEILTGKEL QDQNSHPTKT DSIKVQPVGS DCSTRPSKSE EEQGEASNSQ DKILKKPDKI  120
LPCPRCNSME TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKNSIPHY  180
RQISVSETLP SAQADYPNGI QQPVLAFGSP TPLCESMASV LNIADKTMHN CSQNGFHKPQ  240
DPGVPVSYGA GDNGDDHSRR SSVTTANSED EVSKIVPDQL KNCHNFPPYV ACYPGAPWPY  300
PCNSVPWSSA VPPPGYCPPG FPMPFYPAAS YWGYTVAGSW NVPWISPTTG SLIQTPPTSG  360
PNSPTLGKHS RDENILKQLS NKEESSKESN PEKCLWVPKT LRIDDPREAA KSSIWATLGI  420
KHDSVESVGG SPFNAFQPKN DDNISVSENS TVLQANPAAL SRSVNFNESL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559003.10.0PREDICTED: cyclic dof factor 3-like
TrEMBLA0A2G3A5Z30.0A0A2G3A5Z3_CAPAN; Uncharacterized protein
STRINGSolyc02g067230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-93cycling DOF factor 2