PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g00960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 263aa    MW: 28555 Da    PI: 4.8735
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g00960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.51.6e-14213259248
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                 ++l+r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L ke
  CA02g00960 213 AALQRQRRMIKNRESAARSRERKQAYQVELESIAIRLEEENEQLLKE 259
                 689****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0019212261IPR004827Basic-leucine zipper domain
PfamPF001701.4E-12213259IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.381214259IPR004827Basic-leucine zipper domain
CDDcd147071.92E-15216262No hitNo description
SuperFamilySSF579593.46E-9216259No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-12217259No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASMKLMSSS ASRNSDRRKS SAASSSSSST IPNDMQNQQY SNNGSNNSSN LEATSMTVDG  60
IFPNAYVESQ GITLLDAAGA ITAISDSETV PVTAPVRRTV DDVWREIVEG KREQRRAAIA  120
GCKEEAVDEI MTLEDFLVKA GAVEEESVAM QGPVQGEVKV ELGTERLSGG IFAYDAPYMA  180
TPQQSVQGFG NGMEVIGGGR GKRKAILEPL DKAALQRQRR MIKNRESAAR SRERKQAYQV  240
ELESIAIRLE EENEQLLKEK VM*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682491e-140CU468249.6 S.lycopersicum DNA sequence from clone LE_HBa-94K6 on chromosome 4, complete sequence.
GenBankHG9754431e-140HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-140HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569479.10.0PREDICTED: G-box-binding factor 4-like isoform X2
SwissprotP427771e-39GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A1U8GMZ50.0A0A1U8GMZ5_CAPAN; G-box-binding factor 4-like isoform X2
STRINGSolyc04g071510.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-39bZIP family protein