PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g00820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 165aa MW: 18288.8 Da PI: 7.7857 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.7 | 1.3e-45 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la++++ CA02g00820 11 PCAACKLLRRRCGHDCVFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLRTQLAMAQA 109 7**********************************************************************************************9987 PP DUF260 100 e 100 e CA02g00820 110 E 110 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.7 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-45 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKECGKNSSS PCAACKLLRR RCGHDCVFAP YFPADEPHKF ANVHKVFGAS NVSKMLQELP 60 EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMAQAE VVQLRLRQST 120 GIINNSPPNN DSPITSSQPK GYSHFHMDLD VDQSNCFNEP MWPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 7 | 127 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 7 | 127 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 2e-82 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561978.1 | 1e-122 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-61 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A1U8G035 | 1e-121 | A0A1U8G035_CAPAN; LOB domain-containing protein 3 | ||||
TrEMBL | A0A2G2XDT1 | 1e-121 | A0A2G2XDT1_CAPBA; LOB domain-containing protein 3 | ||||
TrEMBL | A0A2G2Y295 | 1e-121 | A0A2G2Y295_CAPAN; LOB domain-containing protein 4 | ||||
STRING | Solyc02g069440.2.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 7e-64 | LOB domain-containing protein 4 |