PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g00130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 177aa MW: 20072.9 Da PI: 9.1239 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 36.3 | 7.7e-12 | 10 | 70 | 33 | 96 |
GRAS 33 pdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 g+pmq l ay++e+L ++l++ +s++ykal+++e s+e +++++l++e++P++kf++l CA02g00130 10 VCGSPMQCLGAYMLEGLVTKLVSLGSSIYKALRCKEPI---SIELFSYMHLLYEICPYFKFGYL 70 5689*********************************9...9********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.525 | 1 | 176 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-9 | 10 | 70 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MSELRTVGFV CGSPMQCLGA YMLEGLVTKL VSLGSSIYKA LRCKEPISIE LFSYMHLLYE 60 ICPYFKFGYL YGAISLIHAL TAWPGRPPRI HITRIDDSIS DYARGGGIEI VGQRLSALLY 120 LATYLLNFIP WLFLVLMLRS RILMFGLGNH WQSTLLSFYT ICTIRVLELK ITEKKF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581393.1 | 2e-54 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q8GVE1 | 1e-41 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A1U8HJK1 | 4e-53 | A0A1U8HJK1_CAPAN; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A2G2WFJ6 | 4e-53 | A0A2G2WFJ6_CAPBA; Scarecrow-like protein 5 | ||||
TrEMBL | A0A2G2Z5R2 | 4e-53 | A0A2G2Z5R2_CAPAN; scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2G3C2K7 | 4e-53 | A0A2G3C2K7_CAPCH; Chitin-inducible gibberellin-responsive protein 2 | ||||
STRING | PGSC0003DMT400057111 | 2e-53 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 4e-40 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|