PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g34750

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 314aa MW: 35994.2 Da PI: 6.7001

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g34750	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161	4.5e-50	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yL+kk++++k++l +vi+evd++k+ePwd+++k+k +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk ++ k CA01g34750 11 VPPGFRFHPTEEELLHYYLRKKIANDKIDL-DVIREVDLNKMEPWDIQEKCKIgstPQNDWYLFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYG-K 107 69**************************.9***********964444222455*********************************9.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++ktLvfy+grap+g k dW+mheyrl CA01g34750 108 RKRIGMRKTLVFYRGRAPHGLKLDWIMHEYRL 139 889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-57	7	174	IPR003441	NAC domain
PROSITE profile	PS51005	54.669	11	174	IPR003441	NAC domain
Pfam	PF02365	2.7E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MNLTVNGQSQ VPPGFRFHPT EEELLHYYLR KKIANDKIDL DVIREVDLNK MEPWDIQEKC 60 KIGSTPQNDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYGKRKR IGMRKTLVFY 120 RGRAPHGLKL DWIMHEYRLD DNSSTQDHQT DVNFCASESG GVEEGWVVCR VFKKKSSLEI 180 PQSSSSTVQK PNTDGVLDQI LMYMGRSSCK QQQQHETKNN NPNIQFESSF LHLPELVNHH 240 HPTTNNDMEV LIHQDCSFDE MLMSTGTDQI NSPACDWLAL DRLVASQLNG HFDIPTNNNT 300 ARSNDDDGTE FWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	8	179	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	8	179	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	8	179	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	8	179	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	8	179	17	173	NAC domain-containing protein 19
3swm_B	1e-47	8	179	17	173	NAC domain-containing protein 19
3swm_C	1e-47	8	179	17	173	NAC domain-containing protein 19
3swm_D	1e-47	8	179	17	173	NAC domain-containing protein 19
3swp_A	1e-47	8	179	17	173	NAC domain-containing protein 19
3swp_B	1e-47	8	179	17	173	NAC domain-containing protein 19
3swp_C	1e-47	8	179	17	173	NAC domain-containing protein 19
3swp_D	1e-47	8	179	17	173	NAC domain-containing protein 19
3ulx_A	9e-48	5	179	9	173	Stress-induced transcription factor NAC1
4dul_A	1e-47	8	179	14	170	NAC domain-containing protein 19
4dul_B	1e-47	8	179	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269\|PubMed:16214898}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	1e-88	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016557796.1	0.0	PREDICTED: NAC domain-containing protein 66-like
Swissprot	Q9M274	1e-108	NAC66_ARATH; NAC domain-containing protein 66
TrEMBL	A0A2G3APB4	0.0	A0A2G3APB4_CAPAN; NAC domain-containing protein 12
STRING	Solyc08g008660.2.1	1e-159	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	1e-101	NAC domain protein 66

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622]