PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g33480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 27484.5 Da PI: 5.0258 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 62 | 112 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +++Wv+eIr+pse +kr++lg++ t+e+Aa+a++ +++l+g+ CA01g33480 62 IYRGVRRRN-NNKWVCEIREPSE---QKRIWLGTYPTPEMAARAHDVVALALRGN 112 69****887.8*********976...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.94E-28 | 61 | 121 | No hit | No description |
Pfam | PF00847 | 7.7E-13 | 61 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-28 | 62 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 62 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.43 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-26 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MNNNNNSISY FSDSSMANLE RDHSQETSSS SSEKSGGGLL LAANQPKKRA GRKKFKETRH 60 PIYRGVRRRN NNKWVCEIRE PSEQKRIWLG TYPTPEMAAR AHDVVALALR GNLAILNFED 120 SSWRLPVPVS KDPKELRQAA MIAANAFHQD SDESVGVDYM NQEINSNDVV GGGASGSDNN 180 IQNMDILCCN NWGENNEMLE IEGLSWQEKM SEELLFSPTP RFGSCYSWDD VKSDVEVSLW 240 SYNI* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00137 | DAP | Transfer from AT1G12610 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 3e-70 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557784.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A1U8FPV3 | 0.0 | A0A1U8FPV3_CAPAN; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A2G3APG9 | 0.0 | A0A2G3APG9_CAPAN; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_009619193.1 | 1e-108 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63030.2 | 1e-51 | ERF family protein |