PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g32800

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

BES1

Protein Properties

Length: 632aa MW: 71500.1 Da PI: 6.6441

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g32800	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	153.8	1.3e-47	35	172	3	144
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslks 100 + rk+++kE+E++k+RER+RRai+++++aGLR++Gny+lp+raD+n+Vl+AL+r+AGw+ve+DGtt+r++ + + + +s+es+++ ssl++ CA01g32800 35 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNYQLPVRADMNDVLAALARQAGWIVEPDGTTFRQSPNNT------TNNMVMSVESPVSgSSLRN 127 789****************************************************************776666......333344455555556689 PP DUF822 101 salaspvesysaspksssfpspssldsislasa.asllpvlsvls 144 +++++ v+ + ++p+ ++++sp+s+dsi ++++ +++ +++s+ + CA01g32800 128 CSTRASVDCQPSVPRINESLSPASFDSIVVTESdTKVDKFTSTSP 172 ****************************99988655555555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.6E-47	35	176	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	4.92E-160	198	627	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.0E-171	199	628	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	8.3E-82	222	593	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	237	251	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	258	276	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	280	301	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	373	395	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	446	465	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	480	496	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	497	508	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	515	538	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	7.5E-52	551	573	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MTQTRIPNPT SAVHXXXXXX TTTAAAAGTG TTTNKSRKER EKEKERTKLR ERHRRAITSR 60 MLAGLRQYGN YQLPVRADMN DVLAALARQA GWIVEPDGTT FRQSPNNTTN NMVMSVESPV 120 SGSSLRNCST RASVDCQPSV PRINESLSPA SFDSIVVTES DTKVDKFTST SPMNSAECLE 180 AGQFMQELHC GEHGSSFSDT QYVPVFVMLS SGVINNFCQL MDPDGVKEEL QQLKSLKING 240 VVVNCWWGIV ESWVPQKYEW SGYRELFKII RDSKMKLQVV MAFHENGGSD TGGMFISLPQ 300 WVLEIGKDNQ DIFFTDRQGR RNTECLSWGI DKERVLRGRT AIEVYFDVMR SFRTEFDDLF 360 TDGIISAVEI GLGASGELKY PSFSERMGWR YPGIGEFQCY DKYSLQNLRK AATSRGHSFW 420 AKGPDNAGYY NSKPHETGFF CERGDYDSYY GRFFLHWYRQ VLIDHADNVL SLATLAFEGM 480 QIVVKIPAIY WWYRTSSHAA ELTAGYYNPT NQDGYSPVFE VLKKHSVTVK FVNSGLQVPA 540 ADDALADPEG LNWQILNSAW DKEINVAGQN AFPCYDREGL MRLVETAKPR NDPDRRRFSF 600 FTFQQPSPLV QSAICFPELD YFIKCMHGIV F*

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MTQTRIPNPT SAVHXXXXXX TTTAAAAGTG TTTNKSRKER EKEKERTKLR ERHRRAITSR  60
MLAGLRQYGN YQLPVRADMN DVLAALARQA GWIVEPDGTT FRQSPNNTTN NMVMSVESPV  120
SGSSLRNCST RASVDCQPSV PRINESLSPA SFDSIVVTES DTKVDKFTST SPMNSAECLE  180
AGQFMQELHC GEHGSSFSDT QYVPVFVMLS SGVINNFCQL MDPDGVKEEL QQLKSLKING  240
VVVNCWWGIV ESWVPQKYEW SGYRELFKII RDSKMKLQVV MAFHENGGSD TGGMFISLPQ  300
WVLEIGKDNQ DIFFTDRQGR RNTECLSWGI DKERVLRGRT AIEVYFDVMR SFRTEFDDLF  360
TDGIISAVEI GLGASGELKY PSFSERMGWR YPGIGEFQCY DKYSLQNLRK AATSRGHSFW  420
AKGPDNAGYY NSKPHETGFF CERGDYDSYY GRFFLHWYRQ VLIDHADNVL SLATLAFEGM  480
QIVVKIPAIY WWYRTSSHAA ELTAGYYNPT NQDGYSPVFE VLKKHSVTVK FVNSGLQVPA  540
ADDALADPEG LNWQILNSAW DKEINVAGQN AFPCYDREGL MRLVETAKPR NDPDRRRFSF  600
FTFQQPSPLV QSAICFPELD YFIKCMHGIV F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-123	202	628	11	443	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549932.1	0.0	PREDICTED: LOW QUALITY PROTEIN: beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2G3AP00	0.0	A0A2G3AP00_CAPAN; Beta-amylase
STRING	Solyc08g005780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]