PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g32550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 26132.1 Da PI: 10.8881 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.2e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll +++k++G g W++ +++ g+ R++k+c++rw +yl CA01g32550 14 KGAWTAKEDMLLTEYIKEHGEGtGWRALPKKAGLLRCGKSCRLRWVNYL 62 79********************99*********99************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.7e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w+++l CA01g32550 68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIP-GRTDNDIKNYWNTHL 113 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.737 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.22E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.662 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.24E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MGRKPCCSKE GLKKGAWTAK EDMLLTEYIK EHGEGTGWRA LPKKAGLLRC GKSCRLRWVN 60 YLKPGLKRGT FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR TDNDIKNYWN THLLKKLKAQ 120 GNEPRRHKSI RKSKEKEKAS SQKKQTRNQK TKERKKKRKI AENDSNIEER EQVAKKTEEQ 180 LQMQDFSQAV SENNYNFTGK LIGSRNILLL KSLLSRLKST LSVKKX* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 8e-27 | 14 | 144 | 2 | 129 | MYB3 |
3zqc_D | 8e-27 | 14 | 144 | 2 | 129 | MYB3 |
3zqc_G | 8e-27 | 14 | 144 | 2 | 129 | MYB3 |
3zqc_J | 8e-27 | 14 | 144 | 2 | 129 | MYB3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 113 | 131 | LKKLKAQGNEPRRHKSIRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 3e-79 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557730.1 | 1e-145 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A2G3ANV3 | 1e-144 | A0A2G3ANV3_CAPAN; Myb-related protein | ||||
TrEMBL | A0A2G3DHE5 | 1e-144 | A0A2G3DHE5_CAPCH; Myb-related protein | ||||
STRING | XP_009765022.1 | 2e-96 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 6e-62 | myb domain protein 3 |