PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g32310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 377aa    MW: 43680.6 Da    PI: 9.6778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g32310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-141495599
                -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k+g l +p  f+ ++ +g+   +++ ++  + g+ W vk++ +       +++GW  Fv++++L+ gD++vF+++g++ef   v++f++
  CA01g32310 14 I--QPGFKNG-LKIPIGFL-KYlKGQ--DQIEHVVLRSGGKNWLVKVKCW------RFGAGWAAFVEQHDLQLGDILVFRHEGNMEF--EVSIFDS 95
                4..4556665.********.554666..5678888899*********322......389***********************99999..9999986 PP
2B347.14.3e-151662421190
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 ++++ l lp  fa ++g+ ++ +  l+++de+ rsW++kl  + +  r+++++GW +Fv +n Lk gD + F+++ ++e+
  CA01g32310 166 NSRCFLFLPQCFAYANGLTNK-KCGLIIKDERQRSWNLKL--SSYEARTYIRAGWPKFVVDNCLKKGDRIRFEVVTNEET 242
                 567999*******99977644.347999************..99999**************************8875443 PP
3B344.33.3e-14284364387
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 + +++++ ++++ l lp +fa+++g+ + ++ +++l+ e  r W+v l   ++++++ +  GW +F  +ngL++gD+  F+l+++
  CA01g32310 284 S-TLKPYCFTKAFLFLPMRFAKSNGLMN-RNCEMILKGEVQRCWSVWL--GRTGNHFGIIHGWTKFRAENGLQVGDVYKFELIKN 364
                 4.4489999***************8775.5569***************..*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-21397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-215102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.055796IPR003340B3 DNA binding domain
CDDcd100175.04E-16894No hitNo description
SMARTSM010192.9E-141096IPR003340B3 DNA binding domain
PfamPF023623.2E-111895IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-16153253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-16153248IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-12155235No hitNo description
PROSITE profilePS5086312.788156253IPR003340B3 DNA binding domain
SMARTSM010197.9E-9156250IPR003340B3 DNA binding domain
PfamPF023621.8E-12166243IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-19276373IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-17279373IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.055281375IPR003340B3 DNA binding domain
CDDcd100175.15E-14281374No hitNo description
SMARTSM010196.7E-16281375IPR003340B3 DNA binding domain
PfamPF023626.8E-13282366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGQDQIEH VVLRSGGKNW LVKVKCWRFG  60
AGWAAFVEQH DLQLGDILVF RHEGNMEFEV SIFDSTHCDR EYAEYLQEED ACNNVEETSN  120
KLKFNGRPRP RVKLSKKASS DVKAVVHHKS FGHSHFDHII REYNINSRCF LFLPQCFAYA  180
NGLTNKKCGL IIKDERQRSW NLKLSSYEAR TYIRAGWPKF VVDNCLKKGD RIRFEVVTNE  240
ETPIWKFQVS NQETPLQKFQ GEFSRLSSLL FLCLLDVGHS CFVSTLKPYC FTKAFLFLPM  300
RFAKSNGLMN RNCEMILKGE VQRCWSVWLG RTGNHFGIIH GWTKFRAENG LQVGDVYKFE  360
LIKNGEIPIA HFHCKC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754473e-68HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549148.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A2G2W4960.0A0A2G2W496_CAPBA; Uncharacterized protein
STRINGXP_009804336.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-46B3 family protein