PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g31670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 268aa    MW: 29226.2 Da    PI: 8.8689
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g31670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.3e-16211246134
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg
  CA01g31670 211 CHHCGISEsaTPAMRRGPSGPRTLCNACGLMWANKG 246
                 ********9***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.42275110IPR010399Tify domain
SMARTSM009791.0E-875110IPR010399Tify domain
PfamPF062004.1E-1279109IPR010399Tify domain
PfamPF062032.3E-15144185IPR010402CCT domain
PROSITE profilePS5101712.749144186IPR010402CCT domain
SMARTSM004013.0E-10205258IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12209256No hitNo description
Gene3DG3DSA:3.30.50.103.9E-15209251IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.06E-14210258No hitNo description
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
PfamPF003209.9E-14211246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEAAANSRRV KAGEYEHMNV PIRVDEYGGG GFEADDISGG GGEEAMSSGE ELPLCSLPPL  60
VSPVVDSGRV LEMPKRMRTS ELTISFEGQV YVFPAVTPEK VQAVMLLLGG REMPSYVPSS  120
DSVALQSTKS VDNDVFTTPS ISRRTASLIR FREKKKERCF EKKIRYTCRK EVAQRMHRKN  180
GQFASLKEKT AGDSIDSGDS TAHPEPTLRR CHHCGISESA TPAMRRGPSG PRTLCNACGL  240
MWANKGILRD TSKGGRRVPF DKSEPVS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754409e-43HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539325.10.0PREDICTED: GATA transcription factor 19-like isoform X3
SwissprotQ8H1G02e-61GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1U8E7N20.0A0A1U8E7N2_CAPAN; GATA transcription factor 19-like isoform X3
TrEMBLA0A2G2Y3E60.0A0A2G2Y3E6_CAPAN; GATA transcription factor 24
STRINGPGSC0003DMT4000277291e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-49ZIM-LIKE 2