PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g30550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39946.8 Da PI: 9.1513 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.7 | 6.5e-55 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k e kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ CA01g30550 11 LPPGFRFHPTDEELITYYLVNKINDANFTG-RAIADVDLNKSEPWDLPGKAKMEGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIMDSknnt 108 79*************************999.89***************9999999***************************************97766 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++el+g+kktLvfykgrap+gekt+Wvmheyr+ CA01g30550 109 NSELIGMKKTLVFYKGRAPRGEKTNWVMHEYRI 141 6777***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-64 | 4 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.971 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-29 | 12 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEEVMKEETQ LPPGFRFHPT DEELITYYLV NKINDANFTG RAIADVDLNK SEPWDLPGKA 60 KMEGKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IMDSKNNTNS ELIGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR IRSKSSYRTN KQDEWVVCRI FQKSVGLKKC PININHSRAT 180 VSPYSLSMNQ NAPMSSQMIL QLPHDHQGFQ FTMGRSNNNY MNNHGDQIQD LNNRVIFQSG 240 PSNFNNFPQP QMSTYNVGGG STSGGGRGEG DNNYFSISRL NLNLGGRTGA GASSQPILRP 300 MPPPPPPIMS QQELASSMMT NCYGGEMSNA NTMNSGVMSM DHCADLENYW ANY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 8 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 8 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 8 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 8 | 169 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-53 | 8 | 169 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 8 | 169 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 8 | 169 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 3e-86 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975447 | 3e-86 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557718.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 1-like | ||||
TrEMBL | A0A2G3ANV1 | 0.0 | A0A2G3ANV1_CAPAN; Protein CUP-SHAPED COTYLEDON 3 | ||||
STRING | Solyc08g006020.2.1 | 1e-147 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400038464 | 1e-146 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-106 | NAC domain containing protein 38 |