PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g29800
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 834aa    MW: 96856.2 Da    PI: 7.8307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g29800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.9e-1417961099
                HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +++g l +p  f+ ++ +g+  e+++  +  ++g++W+vk+  ++++   + +++W +Fvk+ +L++g ++vF+++g++ef   v++f++
  CA01g29800 17 DFNNG-LKIPIGFL-KYlKGQ--EHVKCAVLKRDGKKWRVKV--NGRK---LEEGNWGKFVKEFDLQVGNILVFSHEGSMEF--EVSIFDS 96
                55555.********.554777..6789***************..7776...77999*******************9998999..9999986 PP
2B347.72.7e-151762511287
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  +++l lp +fa ++++ ++ + +l+++de+ rsW++k++  ++ + r ++++GW++F  +n +kegD + F+++ +
  CA01g29800 176 FRACLFLPQQFALANDLTNK-KCKLIIRDERQRSWKLKICSsSNPRPRAYIGSGWRKFIAENSIKEGDRIKFEVVTN 251
                 46779**********87754.4599**************77444444589***********************7764 PP
3B3505.3e-16301381588
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 +++++ + +g l +pk+fa ++g+ + ++ +l+++de+ rsW++kl  + +s r ++++G ++F  +n LkegD ++F+++ + 
  CA01g29800 301 TIRPYCFLRGTLNVPKQFAIANGLTN-KKCELIVRDERQRSWNLKL--SSGSTRSYIGDGFRKFIADNCLKEGDDIMFEVITNG 381
                 5678889999************8885.5569***************..9999999************************88753 PP
4B337.54.1e-12466548588
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 +++  ++++g+l++pkkfa ++g+ ++ +  l+++de+ rsW++kl++ +++ + +++ G ++   +n  kegD + F+++ + 
  CA01g29800 466 TITQKMFSRGLLYVPKKFAIANGLTNK-KCGLIVRDERQRSWNLKLSFGGTQAQPYIGYGLRKLIAENCTKEGDRIKFEVVTNG 548
                 678999****************77654.3479***********************************************77643 PP
5B358.89.9e-19577661593
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 +++++ l++g+l+lpk+fa ++ +++ ++ +l+++de+ +sW++kl  + ++  +++++GW++Fv +n LkegD ++F+++  s++++v
  CA01g29800 577 TIREYCLSRGLLYLPKQFAFANCLIN-KKHDLIIRDERQKSWNLKL--CYCQTDVYIGDGWRKFVADNCLKEGDRIMFEVVT-SGETPV 661
                 5788999************9995553.3348***************..667777*************************765.555555 PP
6B344.82.2e-14720798587
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 +++ +  ++  l++p +fa+++g++ ++  +++l+de+ r W+v l   + + ++ +t+GW +F  +ngL++gD   F+l+++
  CA01g29800 720 TIKRYCIRKTELYFPLDFAKSNGLNRKC--EMILKDETERCWSVWL--GRLGTHFGITRGWTKFRTENGLQVGDAYKFELIKN 798
                 55677888899**************666..8***************..999999*************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-17399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-185104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.744797IPR003340B3 DNA binding domain
CDDcd100177.19E-14895No hitNo description
SMARTSM010197.0E-131097IPR003340B3 DNA binding domain
PfamPF023624.0E-111896IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-16161260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-18162259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-13164247No hitNo description
PROSITE profilePS5086313.042165262IPR003340B3 DNA binding domain
SMARTSM010192.2E-10165262IPR003340B3 DNA binding domain
PfamPF023622.7E-13176253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-17296389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16297388IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.434297391IPR003340B3 DNA binding domain
SMARTSM010194.2E-14298391IPR003340B3 DNA binding domain
PfamPF023621.2E-13301383IPR003340B3 DNA binding domain
CDDcd100173.06E-12309376No hitNo description
SuperFamilySSF1019364.12E-12461556IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-11461557IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.432462558IPR003340B3 DNA binding domain
SMARTSM010196.5E-7463558IPR003340B3 DNA binding domain
PfamPF023624.8E-10465550IPR003340B3 DNA binding domain
CDDcd100177.64E-9473543No hitNo description
SuperFamilySSF1019368.44E-20572670IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-19572665IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.958573667IPR003340B3 DNA binding domain
SMARTSM010194.1E-16574668IPR003340B3 DNA binding domain
PfamPF023621.3E-16577662IPR003340B3 DNA binding domain
CDDcd100172.20E-13581652No hitNo description
Gene3DG3DSA:2.40.330.103.3E-19711806IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20711807IPR015300DNA-binding pseudobarrel domain
CDDcd100179.41E-13715808No hitNo description
PROSITE profilePS5086312.788716809IPR003340B3 DNA binding domain
SMARTSM010191.9E-17716816IPR003340B3 DNA binding domain
PfamPF023624.0E-13719800IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MKIPPKKPHF FKPILPDFNN GLKIPIGFLK YLKGQEHVKC AVLKRDGKKW RVKVNGRKLE  60
EGNWGKFVKE FDLQVGNILV FSHEGSMEFE VSIFDSSQCS REYSEYMQED VIEDEMEVDE  120
EEDEEDEYVV EEEEEDEYEE EEDEVEEEEE EEVVTDDNSC ERSYFEYTIT PYCLSFRACL  180
FLPQQFALAN DLTNKKCKLI IRDERQRSWK LKICSSSNPR PRAYIGSGWR KFIAENSIKE  240
GDRIKFEVVT NGKTPIWKFQ VDTDYQTPMR NLNIDLSNKT SSHAEAASTN KAFVQSHFEC  300
TIRPYCFLRG TLNVPKQFAI ANGLTNKKCE LIVRDERQRS WNLKLSSGST RSYIGDGFRK  360
FIADNCLKEG DDIMFEVITN GETPIWKFKV VTGGETAVRN PDCVLSHKRR NLNKEITSWN  420
RETTGRLEAQ RERMLLSPNI DLPNMTSSHA EADTNKPFVR SHFVCTITQK MFSRGLLYVP  480
KKFAIANGLT NKKCGLIVRD ERQRSWNLKL SFGGTQAQPY IGYGLRKLIA ENCTKEGDRI  540
KFEVVTNGKT PIWKFQTSSH AEAATNKPFV QSHFECTIRE YCLSRGLLYL PKQFAFANCL  600
INKKHDLIIR DERQKSWNLK LCYCQTDVYI GDGWRKFVAD NCLKEGDRIM FEVVTSGETP  660
VWEFRVNEAK TPLQKYQGKF LMFQNISFYI MKKPSNTSPL NAQVSTSTSG EDDHPYFIST  720
IKRYCIRKTE LYFPLDFAKS NGLNRKCEMI LKDETERCWS VWLGRLGTHF GITRGWTKFR  780
TENGLQVGDA YKFELIKNGE IPIAHFHCKF SFNSNVFLSR LSSMFDSIHK YHY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549257.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A2G3ANT50.0A0A2G3ANT5_CAPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-37B3 family protein