PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g29420
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 349aa    MW: 39730.6 Da    PI: 4.5956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g29420genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09230275555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + eYIk Lq
  CA01g29420 230 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFEYIKFLQ 275
                 57888*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.39E-11223277No hitNo description
SuperFamilySSF474596.28E-12224282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-12224278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.325225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-7230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-10231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MASLSYYAAS KLEPNVQEFN SGEMNMQKQL PAELLFDFNY DFGQNFYVEN PDEACYFDPF  60
FDPDEFILPV ETIDNSCFMP EFSDLESTPK RQKVFQDNFL PENVRTPSHN SCFMSEYSDF  120
ESTPKRQKVF QDNCLPNNTI TPSQNSTFVP EYSVFESTPK RQKVFQDNCN NLFNWGFVPP  180
NPPIFQDFSS YSLPEIPVPV FSSGCCDNNA AVVAKKGGSS TYNEKKMSAQ SIAARQRRKK  240
ITEKTQELGK LIPGGHRMNT AEMLQATFEY IKFLQAQAGL LEFMGSYKEN EKSFDTPDLH  300
KLVGSSLIQE KLYSSEKCLV PKGFLEALQN NQEFQNSQGI EEIKSLIK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541148.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A1U8E1K00.0A0A1U8E1K0_CAPAN; transcription factor bHLH53-like
STRINGPGSC0003DMT4000536511e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-24bHLH family protein