PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g28430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | CO-like | ||||||||
Protein Properties | Length: 358aa MW: 40154 Da PI: 6.5028 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.6e-07 | 13 | 52 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++ + + fC+ + +lC +C +++H H + CA01g28430 13 CDACKAAPSTVFCKADMAFLCLTCDSKIHAAnklasrHAR 52 *****************************65566666655 PP | |||||||
2 | zf-B_box | 24.8 | 4.4e-08 | 54 | 98 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ +++ C+ + lC +C + +H+ H++vp+ CA01g28430 54 LVCEVCEHAPASVTCKADAAALCITCDQDIHSAnplarrHERVPV 98 68*****************************66899999*99986 PP | |||||||
3 | CCT | 68.9 | 1.3e-23 | 278 | 321 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ CA01g28430 278 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 321 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.1E-11 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.684 | 8 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.61E-7 | 13 | 55 | No hit | No description |
PROSITE profile | PS50119 | 11.121 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.4E-6 | 54 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.83E-8 | 55 | 98 | No hit | No description |
SMART | SM00336 | 2.1E-9 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.797 | 278 | 320 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.6E-17 | 278 | 320 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MVVESWSTTA KGCDACKAAP STVFCKADMA FLCLTCDSKI HAANKLASRH ARVLVCEVCE 60 HAPASVTCKA DAAALCITCD QDIHSANPLA RRHERVPVVP FYDSSSARSQ TADDENDPPR 120 LQFEEEEAEA ESWLLQAPNN NQEADEYKSS AAAEYLFGDV DSYVKVDMVS DQKPSNKANT 180 DIQLHQDCVV PHVENKNTEI QLHGPVVDGY PSYEMDFSAG CKPFMYNFST QSISQSVSSS 240 SMEVGVVPDH NTMTDVSTTF VRNSVIDGLP NPISSSDREA RVLRYREKRK NRRFEKTIRY 300 ASRKAYAETR PRIKGRFAKR TESDVVDSLV XGCRHFIWRR SFVLIIWKVY FMLLMKE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549087.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-89 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2G3ANF5 | 0.0 | A0A2G3ANF5_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067657 | 1e-173 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 3e-88 | CONSTANS-like 4 |