PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g27980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 23754 Da PI: 9.3223 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 69 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++Ae+rdp+ ++ + r++lg++ t+e+Aa a+++a+ kl+g CA01g27980 69 YRGVRRRR-WGKFAAEVRDPTRkRNnNNNRVWLGTYETPEDAALAYDRAAYKLRG 122 9****777.**********666655467*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.67 | 68 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-13 | 68 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-28 | 68 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-32 | 68 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 68 | 131 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.2E-13 | 69 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.14E-21 | 77 | 132 | No hit | No description |
PRINTS | PR00367 | 7.2E-13 | 112 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MQPVAFDLSN ILCYDDPFEH YDFFENSEII SPFNNITSAI GYSSDDSTPS PTPILSTVER 60 RAXXXXXXYR GVRRRRWGKF AAEVRDPTRK RNNNNNRVWL GTYETPEDAA LAYDRAAYKL 120 RGTKALLNFP HLICSNVTDD HYNRVRPKRR LGLNSLDEIS IASTKTSTTN EYSPSAKRRN 180 VELINSLAKA NLNSHSIMER FNQLGASC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 69 | 136 | 6 | 69 | ATERF1 |
3gcc_A | 2e-25 | 69 | 136 | 6 | 69 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561519.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor 13 | ||||
TrEMBL | A0A2G3AHG0 | 1e-146 | A0A2G3AHG0_CAPAN; Ethylene-responsive transcription factor 1 | ||||
STRING | PGSC0003DMT400091002 | 5e-63 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-27 | ethylene-responsive element binding factor 13 |