PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g26680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 160aa MW: 17994.8 Da PI: 7.1113 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 27.2 | 4.6e-09 | 2 | 51 | 25 | 77 |
GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 ++l+ +s g+pmqRl y++e+L arla+ +s++ykal+++e ++ +e CA01g26680 2 SELRRVVSVCGSPMQRLGVYMLEGLVARLASLGSSIYKALKCKELTS---VEL 51 789999*************************************9984...333 PP | |||||||
2 | GRAS | 99.7 | 4.4e-31 | 61 | 159 | 183 | 281 |
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 + +++d+e+++L+v+pgE laVn++l lh+++des+ ++++rd++L++vkslsPk+v++veqe+++n+ +F+ fle+l+yy ++f+s+++ lpr+++e CA01g26680 61 SVHTSDVEIKDLNVRPGEPLAVNFALVLHHMHDESAGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPYFLETLNYYLSVFESIDVALPRDHKE 159 447899*****************************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.265 | 1 | 159 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-6 | 2 | 52 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-28 | 61 | 159 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MSELRRVVSV CGSPMQRLGV YMLEGLVARL ASLGSSIYKA LKCKELTSVE LFSTCTCFMK 60 SVHTSDVEIK DLNVRPGEPL AVNFALVLHH MHDESAGTQN HRDRLLRMVK SLSPKIVTLV 120 EQESNTNTVQ FFPYFLETLN YYLSVFESID VALPRDHKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-15 | 58 | 159 | 183 | 279 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 9e-85 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581393.1 | 2e-55 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 2e-44 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2G3ALV2 | 1e-114 | A0A2G3ALV2_CAPAN; Scarecrow-like protein 21 | ||||
STRING | XP_009626207.1 | 3e-52 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 6e-47 | GRAS family protein |
Publications ? help Back to Top | |||
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