PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g23890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 37588.5 Da PI: 9.2395 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++++G g+W++ + + g++R++k+c++rw +yl CA01g23890 14 KGPWTPEEDQKLTYYIEKHGCGSWRALPTKAGLKRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia ++ +Rt++++k++w+++l CA01g23890 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLA-NRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.181 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.26E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.614 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.84E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGRSPCCEKV GLKKGPWTPE EDQKLTYYIE KHGCGSWRAL PTKAGLKRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLANRT DNEIKNYWNT HLKKRLTKMG 120 IDPNTHKPRS NFGSANLSHM AQWENARLEA EARLVRESKK QQQIILINND INNYNNIHFG 180 TNNLGTKNVL LPLQTKLPSL PCLDVLKAWQ GGANWSNWPK IKKDKFFDNF PTSSASLSNN 240 NLLLMVPSNN NNNNNILGAG VVNTCLVGAG SFLGNNINEI SSYSSYPCLN DIQGFTQLES 300 VVGSCQDDYD NNDNNYWNTI LNSCTSLADG SPVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-102 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556225.1 | 0.0 | PREDICTED: myb-related protein Hv1-like | ||||
TrEMBL | A0A1U8FKD4 | 0.0 | A0A1U8FKD4_CAPAN; myb-related protein Hv1-like | ||||
STRING | PGSC0003DMT400062437 | 1e-174 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 7e-94 | myb domain protein 16 |