PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g23330

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 565aa MW: 63510.8 Da PI: 6.2048

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g23330	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	289.8	7.6e-89	193	562	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsevsPilkfshlt 97 + Ll++Ae vs+++ +a+++L++ + las++g+++qR ++yf++AL +r+ r++ l ++++++++ ++ ++ +l+a ++ +++ P+ ++ h+t CA01g23330 193 AQILLAAAEKVSEQQYDRARKFLSQCQLLASKAGNTVQREVFYFAQALGERIDRETGILTPKISAETNELNSicTAPRLHASHVaLHQEVPFTQVVHFT 291 689*************************************************5555555555555554447788888888889********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 qaIle+v+++ +vH iDf i G+QW++L+qa a+R+ ++ ++ iT+++s ++k+++e+tg+ L++fA++l+ pf+f+++ + ++l+ +++ CA01g23330 292 GIQAILESVATKPKVHLIDFHIRTGVQWASLIQAAAERKdNPIEHMNITVIES---VNKQRVEKTGKSLESFATSLNFPFSFKIVFLPDRNQLTKDHFY 387 **********************************955566*****...78**********************9999******* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++p+E ++++ ++ l + e+ +le +++vk+l+P ++vv+e ea++ns+ F++rf+++l yysalfd+le + r++++r+++E+ g i CA01g23330 388 IEPDEGVVIHAAFFLRAMICEPNCLET----AMRVVKQLQPSLMVVSEVEANLNSPVFVHRFIDSLFYYSALFDCLEDVMKRDDQHRMTIEES-YGGGI 481 ***************88888888....**********************************************************.899 PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 n+v eg+er+ r +l Wr+ l+++G+++v+ls++ qa+l++++++ d + + + gsl Wk+ p++s+SaW+ CA01g23330 482 LNIVGSEGKERVIRSVNLDVWRSFLGRFGMEEVKLSDTCLYQANLIIQQFDcRDSCSADMNGGSLAVSWKGTPIYSTSAWK 562 *************************************************99999999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.2	166	541	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-86	193	562	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MSNPLFHLAS FTSNQIPESD GSLRGCRVNI AKSDNHLSVM EDSKDIQNFY TNYGFYQGYA 60 VNQQEQEMNK QQQEMNVYAA HSADQLSQGE VKLNSLETGS NVGEVPFLSL APFELLRNNP 120 SKHKNTEGDK ARDVNGGANV HQKLSAMHIM RLAGERFIQF SSNKFININN LLHPYGSALS 180 YLSTEDNQDV ELAQILLAAA EKVSEQQYDR ARKFLSQCQL LASKAGNTVQ REVFYFAQAL 240 GERIDRETGI LTPKISAETN ELNSICTAPR LHASHVALHQ EVPFTQVVHF TGIQAILESV 300 ATKPKVHLID FHIRTGVQWA SLIQAAAERK DNPIEHMNIT VIESVNKQRV EKTGKSLESF 360 ATSLNFPFSF KIVFLPDRNQ LTKDHFYIEP DEGVVIHAAF FLRAMICEPN CLETAMRVVK 420 QLQPSLMVVS EVEANLNSPV FVHRFIDSLF YYSALFDCLE DVMKRDDQHR MTIEESYGGG 480 ILNIVGSEGK ERVIRSVNLD VWRSFLGRFG MEEVKLSDTC LYQANLIIQQ FDCRDSCSAD 540 MNGGSLAVSW KGTPIYSTSA WKFH*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MSNPLFHLAS FTSNQIPESD GSLRGCRVNI AKSDNHLSVM EDSKDIQNFY TNYGFYQGYA  60
VNQQEQEMNK QQQEMNVYAA HSADQLSQGE VKLNSLETGS NVGEVPFLSL APFELLRNNP  120
SKHKNTEGDK ARDVNGGANV HQKLSAMHIM RLAGERFIQF SSNKFININN LLHPYGSALS  180
YLSTEDNQDV ELAQILLAAA EKVSEQQYDR ARKFLSQCQL LASKAGNTVQ REVFYFAQAL  240
GERIDRETGI LTPKISAETN ELNSICTAPR LHASHVALHQ EVPFTQVVHF TGIQAILESV  300
ATKPKVHLID FHIRTGVQWA SLIQAAAERK DNPIEHMNIT VIESVNKQRV EKTGKSLESF  360
ATSLNFPFSF KIVFLPDRNQ LTKDHFYIEP DEGVVIHAAF FLRAMICEPN CLETAMRVVK  420
QLQPSLMVVS EVEANLNSPV FVHRFIDSLF YYSALFDCLE DVMKRDDQHR MTIEESYGGG  480
ILNIVGSEGK ERVIRSVNLD VWRSFLGRFG MEEVKLSDTC LYQANLIIQQ FDCRDSCSAD  540
MNGGSLAVSW KGTPIYSTSA WKFH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-46	215	562	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559652.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A1U8FKA2	0.0	A0A1U8FKA2_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3AK28	0.0	A0A2G3AK28_CAPAN; DELLA protein RGL1-like
STRING	PGSC0003DMT400088400	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13910	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	9e-57	RGA-like protein 3