PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g22800

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 984aa MW: 109192 Da PI: 6.0111

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g22800	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9e-41	126	203	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ CA01g22800 126 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 203 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.5E-33	122	188	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	124	201	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.85E-38	125	206	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.6E-30	127	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.35E-7	753	867	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-5	756	870	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.09E-6	757	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MGGPDLRGLG KRSLEWDLTD WKWDGDLFIA TPLHQNAPNY QSRQFFPVET GNLASSNSSS 60 SCSEEVNHGM EQQRRELEKR RRVIVVEEDD SGPLSQLPHP PXLGGNWDGA AGKRTKLVAP 120 AGSRAVCQVD DCGTDLSKAK DYHRRHKVCE MHSKASRALV GNVMQRFCQQ CSRFHALQEF 180 DEGKRSCRRR LAGHNKRRRK TQSESVANNN SVNEGQASGY SLMSLLKILS NMHSNGTNPT 240 EDQNLLSHLL RSLASQGTTN GDKSLSGLLQ ESSNLLNNRS ILRNPEVASL ISNGSQAPPR 300 AKEHQFTNSA TEMPQKRLDV HDVRLEDART ASSQSPGILF PIQSNSQAYT PGRESTTGRS 360 KLMDFDLNDA YVDSDDCGED LVRSPVPECP SWLQQDSHQS SPPQTSGNSD SASAQSPSSS 420 SGDNQNRTDR IVFKLFGKDP SDFPFVVRAQ ILDWLSHSPT EIESYIRPGC IVLTIYLRLP 480 ESAWEELSYN LSSSLSRLLD VPGGDSFWTR GWIYIRVQNQ IAFVCDGQVL LDMSLPYVSN 540 DDSTLLSVRP IAVPVSGRVQ FLVKGYNLTK PSTRLLCALD GSYLVPEANN EVEEHGDVVG 600 KDDKIQSLNF TYSVSAVAGR GFIEVEDHGV NNSFFPFIIA EEDVCSEIRM LESDLELSSS 660 DYVNGQTSNM EARNQAMDFI HELGWLLHRN NLKARLDHFG PNAVLYPLKR FKWLVDFSVD 720 HDWCAVVKKL LNILLDGTVG AGDNSFLKFA LSELGLLHRA VRRNSRPLVE LLLTYTPESV 780 ADELCSEYQS LVGIDGEFLF RPDCVGPAGL TPLHVAACID GYEDVLDALT DDPGKVAIEA 840 WKNTRDGAGF TPEDYARLRG HYSYIHLVQR KISKKATSGH IVVDIPSVPA VVESNNQKDE 900 VYTTTSLEIT MTERTPIARP CGLCDRKLAY GSRGRSLLYR PAMFSMVAMA AVCVCVALLF 960 RGSPEVLYIF RPFRWEMVDF GTS*

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MGGPDLRGLG KRSLEWDLTD WKWDGDLFIA TPLHQNAPNY QSRQFFPVET GNLASSNSSS  60
SCSEEVNHGM EQQRRELEKR RRVIVVEEDD SGPLSQLPHP PXLGGNWDGA AGKRTKLVAP  120
AGSRAVCQVD DCGTDLSKAK DYHRRHKVCE MHSKASRALV GNVMQRFCQQ CSRFHALQEF  180
DEGKRSCRRR LAGHNKRRRK TQSESVANNN SVNEGQASGY SLMSLLKILS NMHSNGTNPT  240
EDQNLLSHLL RSLASQGTTN GDKSLSGLLQ ESSNLLNNRS ILRNPEVASL ISNGSQAPPR  300
AKEHQFTNSA TEMPQKRLDV HDVRLEDART ASSQSPGILF PIQSNSQAYT PGRESTTGRS  360
KLMDFDLNDA YVDSDDCGED LVRSPVPECP SWLQQDSHQS SPPQTSGNSD SASAQSPSSS  420
SGDNQNRTDR IVFKLFGKDP SDFPFVVRAQ ILDWLSHSPT EIESYIRPGC IVLTIYLRLP  480
ESAWEELSYN LSSSLSRLLD VPGGDSFWTR GWIYIRVQNQ IAFVCDGQVL LDMSLPYVSN  540
DDSTLLSVRP IAVPVSGRVQ FLVKGYNLTK PSTRLLCALD GSYLVPEANN EVEEHGDVVG  600
KDDKIQSLNF TYSVSAVAGR GFIEVEDHGV NNSFFPFIIA EEDVCSEIRM LESDLELSSS  660
DYVNGQTSNM EARNQAMDFI HELGWLLHRN NLKARLDHFG PNAVLYPLKR FKWLVDFSVD  720
HDWCAVVKKL LNILLDGTVG AGDNSFLKFA LSELGLLHRA VRRNSRPLVE LLLTYTPESV  780
ADELCSEYQS LVGIDGEFLF RPDCVGPAGL TPLHVAACID GYEDVLDALT DDPGKVAIEA  840
WKNTRDGAGF TPEDYARLRG HYSYIHLVQR KISKKATSGH IVVDIPSVPA VVESNNQKDE  900
VYTTTSLEIT MTERTPIARP CGLCDRKLAY GSRGRSLLYR PAMFSMVAMA AVCVCVALLF  960
RGSPEVLYIF RPFRWEMVDF GTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	126	200	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539898.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1U8DXZ3	0.0	A0A1U8DXZ3_CAPAN; squamosa promoter-binding-like protein 1
STRING	PGSC0003DMT400013317	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]