PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g20220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 40758.2 Da PI: 6.3726 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl CA01g20220 32 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 79 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+v+++ lG++ W+ Ia++++ gRt++++k++w++ CA01g20220 85 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 128 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.768 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.19E-28 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.67E-10 | 35 | 79 | No hit | No description |
PROSITE profile | PS51294 | 25.534 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-16 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-15 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-11 | 87 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 87 | 135 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MRKPEHNSSN PSPSTMMKEK EKEKGNKAKL RKGLWSPEED EKLMNYMLTN GQGCWSDIAR 60 NAGLQRCGKS CRLRWINYLR PDLKRGAFSP QEEELIVHLH SILGNRWSQI AARLPGRTDN 120 EIKNFWNSTI KKRLKNNNNN NNHSNNSTPS PNASDSSSDP RALVGGIFPM QGHDVNVMAA 180 FCMDNSSSTT SGSSMQAMVP SNHFNPFPQL DNTSYDISGL VGPVNLGQFG CNGCDGGFLD 240 YGVEETYSMM GLESDEFSVP PLGGVHKSTM GENNNNNSHV NFSSNIVIGA NDYMVEKKIT 300 NGNNNNNNQH LVNMSGSSDQ SLKVEDYMVG FGNHNHWHGE SLRIGEFDWE GLLANVSSLP 360 YLDFQVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 30 | 134 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-147 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556827.1 | 0.0 | PREDICTED: transcription factor RAX1 | ||||
TrEMBL | A0A1U8FBW0 | 0.0 | A0A1U8FBW0_CAPAN; transcription factor RAX1 | ||||
TrEMBL | A0A2G3AK69 | 0.0 | A0A2G3AK69_CAPAN; Transcription factor MYB86 | ||||
STRING | PGSC0003DMT400017709 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 5e-69 | myb domain protein 83 |