PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g20090

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 66aa MW: 7644.85 Da PI: 9.6833

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g20090	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.6e-11	2	41	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR ri +++ +L++l P+ +k + a++L +Av+YIk+Lq CA01g20090 2 RRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 41 9***************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.811	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-6	1	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-8	2	41	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.97E-8	2	45	No hit	No description
SuperFamily	SSF47459	1.44E-14	3	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-16	3	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MRRTRISERM KKLQDLFPNM DKQTNTADML DLAVDYIKDL QKQVQTLTDK KAKCSCTSKQ 60 LEYST*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC220060	7e-31	AC220060.1 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence.
GenBank	HG975440	7e-31	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	7e-31	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227279.1	7e-36	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	5e-23	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A314KQP4	2e-34	A0A314KQP4_NICAT; Transcription factor bhlh130
STRING	XP_009757642.1	1e-33	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11787	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-25	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]