PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g19850
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family BBR-BPC
Protein Properties Length: 275aa    MW: 30822.1 Da    PI: 10.0682
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g19850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind300.75.5e-92227425301
   GAGA_bind  25 glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsa 123
                 ++++  + aerda+++er+ a++ekk+a+aer+ a +qrd+a+aer+ a+ erdn+++al + e +++ +    +   +gtk  ++ +++  ++ +ds 
  CA01g19850   2 NTKIRMVFAERDAAVEERDRAVIEKKEALAERELAIQQRDTAFAERDTAIKERDNAIAALHFLESTMNGT---LSCRKRGTKRPNQPKNHC-NNNSDSV 96 
                 566777889*****************************************************99986533...355567888877666633.4444444 PP

   GAGA_bind 124 velreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrq 221
                    r+    +a+pi++  ++a ++ + k+ ++ +k+ + k+ k  +k++k k++ +++ + + skae++ +dl ++n++++Dest+P+PvC+CtG++rq
  CA01g19850  97 CINRDVPVADAFPISTMSSDAGKALQGKR-SKVNKTMSMKSAKFPRKTKKVKEDLNRQFSTDGSKAEWDAQDLgSVNQIQFDESTMPIPVCTCTGIPRQ 194
                 446999999*******9999888877774.444444555555555556677777777777788**********88************************ PP

   GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 CYkWG+GGWqS+CCtt +S yPLP+ +++r+ R++grKmS+++f++lL +La   +dls p+DLk++WAkHGtn+++ti+
  CA01g19850 195 CYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHGRLGGRKMSGSVFSRLLTRLALADHDLSMPIDLKTYWAKHGTNRYITIK 274
                 *******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.2E-871274IPR010409GAGA-binding transcriptional activator
SMARTSM012266.4E-941274IPR010409GAGA-binding transcriptional activator
Gene3DG3DSA:2.60.40.13204.6E-452146IPR007226SRS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNTKIRMVFA ERDAAVEERD RAVIEKKEAL AERELAIQQR DTAFAERDTA IKERDNAIAA  60
LHFLESTMNG TLSCRKRGTK RPNQPKNHCN NNSDSVCINR DVPVADAFPI STMSSDAGKA  120
LQGKRSKVNK TMSMKSAKFP RKTKKVKEDL NRQFSTDGSK AEWDAQDLGS VNQIQFDEST  180
MPIPVCTCTG IPRQCYKWGS GGWQSSCCTT YLSEYPLPQL PNKRHGRLGG RKMSGSVFSR  240
LLTRLALADH DLSMPIDLKT YWAKHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823150.0FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539855.10.0PREDICTED: protein BASIC PENTACYSTEINE5
RefseqXP_016539856.10.0PREDICTED: protein BASIC PENTACYSTEINE5
SwissprotQ8S8C65e-95BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1U8E0B40.0A0A1U8E0B4_CAPAN; Protein BASIC PENTACYSTEINE4
TrEMBLA0A2G3AH250.0A0A2G3AH25_CAPAN; protein BASIC PENTACYSTEINE5
STRINGSolyc01g110470.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.12e-91basic pentacysteine 5