PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g19720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 98aa    MW: 10837.5 Da    PI: 10.164
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g19720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-191548134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  CA01g19720 15 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 48
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-16871No hitNo description
PROSITE profilePS5011412.268945IPR000679Zinc finger, GATA-type
SMARTSM004018.3E-15963IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-151247IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.07E-111463No hitNo description
PfamPF003202.3E-171548IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401540IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MKKSSLTEPG SGRRCTHCQV QKTPQWRAGP LGPKTLCNAC GVRYKSGRLY PEYRPACSPT  60
FSQEVHSNSH RKVLEMRRKK ETGEVIEPGL ASMISTC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-101HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539828.19e-66PREDICTED: GATA transcription factor 5
SwissprotQ9FH572e-40GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1U8DXS62e-64A0A1U8DXS6_CAPAN; GATA transcription factor
TrEMBLA0A2G2XNY62e-64A0A2G2XNY6_CAPBA; GATA transcription factor
TrEMBLA0A2G3AH042e-65A0A2G3AH04_CAPAN; Uncharacterized protein
TrEMBLA0A2G3BW352e-64A0A2G3BW35_CAPCH; GATA transcription factor
STRINGXP_009802570.16e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-42GATA transcription factor 5