PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g19340

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 427aa MW: 47627.1 Da PI: 6.0532

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g19340	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.9	4.7e-13	186	216	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++A+Pk+i+e+m+ +gLt+ehv+ HLQkYRl CA01g19340 186 KEAVPKKIVEIMDEPGLTREHVARHLQKYRL 216 68****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	5.41E-7	13	126	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	9.3E-10	17	154	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-12	179	220	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.38E-5	180	220	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-10	183	216	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDIQGVGANS SDMGTKNICI VLVLDDFTIH HIVSDMLDNQ TYQEYLQSCF VEKTMDALNV 60 IWERKSIFNL VLTNIHRLHT NGVDILQIIK NKLNLPTILM SPGDEKYENQ VQDCSVAAYV 120 VSFSDTNEMN KFWQKVLEKE KGRKAAEENN DDENATRMPQ NVTADTSRDN TSSADTDTAI 180 HARDTKEAVP KKIVEIMDEP GLTREHVARH LQKYRLCLKR AQKSSSASIY DEILSNDAKE 240 KFSQVQPYLS SLNFSASRGY SHSMQQPFQT YFQQGTGGMN GLLDFANSRE ADHNALIGQH 300 SAFVPRIAHG SNFRVYGDKR KNMLFSIQSG NANQPTNSNS GLEFIGFRLS TDGKSVNFGQ 360 KGLSCALIPN NAYSGLSSSL SEDYIHKQQS SPPFLETPIE NTLIQSSSVQ PENLTFNHPC 420 NSTSEQ*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDIQGVGANS SDMGTKNICI VLVLDDFTIH HIVSDMLDNQ TYQEYLQSCF VEKTMDALNV  60
IWERKSIFNL VLTNIHRLHT NGVDILQIIK NKLNLPTILM SPGDEKYENQ VQDCSVAAYV  120
VSFSDTNEMN KFWQKVLEKE KGRKAAEENN DDENATRMPQ NVTADTSRDN TSSADTDTAI  180
HARDTKEAVP KKIVEIMDEP GLTREHVARH LQKYRLCLKR AQKSSSASIY DEILSNDAKE  240
KFSQVQPYLS SLNFSASRGY SHSMQQPFQT YFQQGTGGMN GLLDFANSRE ADHNALIGQH  300
SAFVPRIAHG SNFRVYGDKR KNMLFSIQSG NANQPTNSNS GLEFIGFRLS TDGKSVNFGQ  360
KGLSCALIPN NAYSGLSSSL SEDYIHKQQS SPPFLETPIE NTLIQSSSVQ PENLTFNHPC  420
NSTSEQ*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-156	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015168044.1	0.0	PREDICTED: two-component response regulator ARR14-like
Refseq	XP_016480490.1	0.0	PREDICTED: two-component response regulator ARR12-like
TrEMBL	A0A2G3DE17	0.0	A0A2G3DE17_CAPCH; Uncharacterized protein
STRING	PGSC0003DMT400089008	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3659	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-18	response regulator 2