PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g17370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 119aa MW: 14048.1 Da PI: 9.8501 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.6 | 7.6e-12 | 4 | 32 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++ LAk+l+L +rqV vWFqNrRa+ k CA01g17370 4 KQKLALAKQLNLRQRQVEVWFQNRRARTK 32 67889**********************98 PP | |||||||
2 | HD-ZIP_I/II | 90.9 | 1.4e-29 | 3 | 68 | 26 | 92 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk CA01g17370 3 QKQKLALAKQLNLRQRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 68 689***********************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.989 | 1 | 34 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-6 | 3 | 35 | No hit | No description |
Pfam | PF00046 | 2.6E-9 | 4 | 32 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 4 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-10 | 4 | 43 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 9 | 32 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.4E-12 | 34 | 68 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.1E-26 | 34 | 77 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MVQKQKLALA KQLNLRQRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE 60 LQELRALKTS NPFYMQLPAT TLTMCPSCER VASTTTSAPX XXXXXXXNHH YHHHYQSP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 34 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 2e-69 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016537388.1 | 3e-63 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q6YPD0 | 8e-55 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A1U8DQT5 | 7e-62 | A0A1U8DQT5_CAPAN; homeobox-leucine zipper protein HOX11-like | ||||
TrEMBL | A0A2G3DGM0 | 8e-62 | A0A2G3DGM0_CAPCH; Homeobox-leucine zipper protein HOX27 | ||||
STRING | Gorai.006G143600.1 | 9e-57 | (Gossypium raimondii) | ||||
STRING | GLYMA15G42380.1 | 1e-56 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-45 | homeobox from Arabidopsis thaliana |