PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g17270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 139aa MW: 15843.2 Da PI: 8.4806 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121 | 6.4e-38 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrr+C++dC++ pyfp ++p++f +vhk++Gasnv k+l++++e++r d+++sl+yeA +r++ Pv+G++g+i+ l+q++++ k ela++++ CA01g17270 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHKIYGASNVGKMLQQVQEHQRADVANSLYYEAYCRIKSPVHGCLGIISILRQEIDHFKCELAKIQA 103 6**********************************************************************************************9998 PP DUF260 100 e 100 e CA01g17270 104 E 104 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.188 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-37 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
MSSRRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHKI YGASNVGKML QQVQEHQRAD 60 VANSLYYEAY CRIKSPVHGC LGIISILRQE IDHFKCELAK IQAELSLVKA QAQIEAQGQV 120 ESDVYHPSFD ISSTPWFY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-49 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356568.1 | 3e-77 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 4e-44 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2G3AIY3 | 9e-99 | A0A2G3AIY3_CAPAN; LOB domain-containing protein 23 | ||||
STRING | Solyc06g064540.1.1 | 7e-73 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-46 | LOB domain-containing protein 24 |