PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g17160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 230aa    MW: 27130.8 Da    PI: 9.6031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g17160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.3e-5291381129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPt+eel+++yLkkk++ +k+++ evi+e+d++kvePw+L+++++     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + +
  CA01g17160   9 VPPGFRFHPTEEELLHYYLKKKLSFHKFDM-EVIREIDLNKVEPWELQERCNIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-S 105
                 69****************************.99**************964444222456*************************************9.8 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++g++ktLvfy+grap+g+ktdW+mheyrle
  CA01g17160 106 FKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138
                 899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-547142IPR003441NAC domain
PROSITE profilePS5100552.3659229IPR003441NAC domain
PfamPF023652.5E-2710137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASSSNGGVP PGFRFHPTEE ELLHYYLKKK LSFHKFDMEV IREIDLNKVE PWELQERCNI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYRG  120
RAPHGQKTDW IMHEYRLEDA DENISVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-47913717142NO APICAL MERISTEM PROTEIN
1ut4_B9e-47913717142NO APICAL MERISTEM PROTEIN
1ut7_A9e-47913717142NO APICAL MERISTEM PROTEIN
1ut7_B9e-47913717142NO APICAL MERISTEM PROTEIN
3swm_A9e-47913720145NAC domain-containing protein 19
3swm_B9e-47913720145NAC domain-containing protein 19
3swm_C9e-47913720145NAC domain-containing protein 19
3swm_D9e-47913720145NAC domain-containing protein 19
3swp_A9e-47913720145NAC domain-containing protein 19
3swp_B9e-47913720145NAC domain-containing protein 19
3swp_C9e-47913720145NAC domain-containing protein 19
3swp_D9e-47913720145NAC domain-containing protein 19
3ulx_A1e-46913715140Stress-induced transcription factor NAC1
4dul_A9e-47913717142NAC domain-containing protein 19
4dul_B9e-47913717142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755189e-86HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556495.11e-105PREDICTED: protein BEARSKIN2
SwissprotQ9SV871e-95BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A2G2V9391e-104A0A2G2V939_CAPBA; Protein BEARSKIN2
TrEMBLA0A2G3AIX31e-104A0A2G3AIX3_CAPAN; Protein BEARSKIN2
TrEMBLA0A2G3DGI51e-104A0A2G3DGI5_CAPCH; Protein BEARSKIN2
STRINGSolyc06g063430.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-85NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]