PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g17160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 27130.8 Da PI: 9.6031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.3 | 1.3e-52 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yLkkk++ +k+++ evi+e+d++kvePw+L+++++ ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + CA01g17160 9 VPPGFRFHPTEEELLHYYLKKKLSFHKFDM-EVIREIDLNKVEPWELQERCNIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-S 105 69****************************.99**************964444222456*************************************9.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfy+grap+g+ktdW+mheyrle CA01g17160 106 FKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138 899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-54 | 7 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.365 | 9 | 229 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MASSSNGGVP PGFRFHPTEE ELLHYYLKKK LSFHKFDMEV IREIDLNKVE PWELQERCNI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYRG 120 RAPHGQKTDW IMHEYRLEDA DENISVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-47 | 9 | 137 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-47 | 9 | 137 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-47 | 9 | 137 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-47 | 9 | 137 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swm_B | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swm_C | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swm_D | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swp_A | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swp_B | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swp_C | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3swp_D | 9e-47 | 9 | 137 | 20 | 145 | NAC domain-containing protein 19 |
3ulx_A | 1e-46 | 9 | 137 | 15 | 140 | Stress-induced transcription factor NAC1 |
4dul_A | 9e-47 | 9 | 137 | 17 | 142 | NAC domain-containing protein 19 |
4dul_B | 9e-47 | 9 | 137 | 17 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 9e-86 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556495.1 | 1e-105 | PREDICTED: protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-95 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A2G2V939 | 1e-104 | A0A2G2V939_CAPBA; Protein BEARSKIN2 | ||||
TrEMBL | A0A2G3AIX3 | 1e-104 | A0A2G3AIX3_CAPAN; Protein BEARSKIN2 | ||||
TrEMBL | A0A2G3DGI5 | 1e-104 | A0A2G3DGI5_CAPCH; Protein BEARSKIN2 | ||||
STRING | Solyc06g063430.1.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-85 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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