PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g16860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21420.8 Da PI: 4.9352 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.2e-21 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++a+k+++g CA01g16860 18 KYRGIRQRT-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEAAKRIRG 67 8*****999.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.13E-34 | 18 | 77 | No hit | No description |
PROSITE profile | PS51032 | 24.012 | 18 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-14 | 18 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-23 | 18 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-38 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-33 | 18 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
TSLKVEKESS GSRPRKNKYR GIRQRTWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDE 60 AAKRIRGDKA KLNFPQSLST PSPPAKRQCA STTVPDPPAL LESSNIISDN SSLMNFGYPN 120 ETVPYYPMEV AAAADQDNHH DDYELKEQIS NLESFLELEP ADSSQFSGIV DSDPFNVFLM 180 EDFAATQQPV Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-23 | 5 | 82 | 1 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259599 | 6e-74 | HQ259599.1 Petunia x hybrida ethylene-responsive-element-binding factor 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581889.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 8e-43 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A1U8HMX9 | 1e-139 | A0A1U8HMX9_CAPAN; Ethylene-responsive transcription factor | ||||
TrEMBL | A0A2G3AIS3 | 1e-139 | A0A2G3AIS3_CAPAN; ethylene-responsive transcription factor RAP2-3 | ||||
STRING | PGSC0003DMT400043311 | 7e-94 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-34 | ethylene-responsive element binding protein |