PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g15760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31871.2 Da PI: 8.3728 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 7.9e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++ Ed +l+d++ ++G g+W++++ g+ Rt+k+c++rw +yl CA01g15760 15 RGLWSPYEDHKLKDYILKHGHGCWASVPINSGLQRTGKSCRLRWINYL 62 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.8e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++teE+e ++ ++ +lG++ W+ Ia++++ gRt++++k++w+++l CA01g15760 68 RGTFSTEEEETILTLHGMLGNK-WSQIAQHLP-GRTDNEIKNHWHSHL 113 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-21 | 9 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.825 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.31E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-9 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-7 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.795 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGCKQMDKPK QKHKRGLWSP YEDHKLKDYI LKHGHGCWAS VPINSGLQRT GKSCRLRWIN 60 YLRPGLKRGT FSTEEEETIL TLHGMLGNKW SQIAQHLPGR TDNEIKNHWH SHLKKSVSKM 120 AKTYSENAEA SSSSMKLVSK KSANLGSFEL VEGALLADIH QSTLHVQLPQ ENCECNLPKV 180 LFSEWLSLDQ FNVQDFKNTI KQHHSKNNYG CNDSVFQLDA FAQYGPLLAM NEAITYGNDI 240 NGGFNNMFQP PLKFDNQIFV NGFEEFISGE FNMNGGVMYI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-22 | 15 | 118 | 7 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016557291.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | A0A2G3AJG4 | 0.0 | A0A2G3AJG4_CAPAN; Transcription factor MYB86 | ||||
STRING | XP_009792992.1 | 1e-123 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 6e-57 | myb domain protein 19 |