PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g14220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 129aa    MW: 14098.2 Da    PI: 10.9965
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g14220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-181145135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ Cgtt TplWR gp g+k+LCnaCG++ rkk++
  CA01g14220 11 CVDCGTTRTPLWRIGPAGPKSLCNACGIRSRKKRR 45
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-13557IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.571541IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12852No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15945IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.84E-111061No hitNo description
PfamPF003202.2E-161145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MISIEIQSKT CVDCGTTRTP LWRIGPAGPK SLCNACGIRS RKKRRALLEL NKENKNIKKS  60
SASKNKNNQN PSSNNCTSNS GDSTNNTNVK KKLSLQRSRS NSTHWKKLGE VEKAAFLLMS  120
LSCGLVFV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7181454e-34AJ718145.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT31-3-470, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572171.11e-40PREDICTED: GATA transcription factor 15-like
RefseqXP_022874683.18e-41GATA transcription factor 16-like
TrEMBLA0A2G3AJ277e-86A0A2G3AJ27_CAPAN; GATA transcription factor 23
STRINGXP_009767635.14e-37(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-24GATA transcription factor 16