PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g13490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 510aa MW: 55305.3 Da PI: 5.5553 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.6e-16 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +lvd+v G g+W+++ r+ g+ R++k+c++rw ++l CA01g13490 33 KGPWTTVEDAILVDYVMTNGEGNWNAVQRHSGLARCGKSCRLRWANHL 80 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ CA01g13490 86 KGAFTPEEERRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 129 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.806 | 28 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-28 | 30 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 32 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 33 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 34 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-9 | 35 | 80 | No hit | No description |
PROSITE profile | PS51294 | 26.215 | 81 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-16 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 86 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 88 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.27E-12 | 88 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MSITSETDDM MTSKVDIDSP DEASGGESVP LKKGPWTTVE DAILVDYVMT NGEGNWNAVQ 60 RHSGLARCGK SCRLRWANHL RPDLKKGAFT PEEERRILEL HAKMGNKWAR MAAELPGRTD 120 NEIKNYWNTR IKRRQRAGLP VYPPDISFLA NQNKQNEELG AFSSVDAQNS NVLGINNFEI 180 PAVEFKNLQL DHLLYPPPLG EIPAVSSFLA QGHRAPYGST YLLSTMHPSK RIRGSESMFS 240 GSNGDLLLSS SQYHNGGSLL AQPLGFSSYN HHLTYDDDRS FSSVVHGGHA CLNGNSSSSE 300 PTWAMKLELP SLQNQTANWG SPPSPLPSLE SDDILIQSPP AGNSESGSLS PSNSGLLDAV 360 LYESQTMKAS NDNSHQGKET SGDAVNKGWE SYGDPVSPLH HFSASVFGEY TPVNGSSLHE 420 FPSVATMPGC KIKKEIGDLA PLDENDDSLN QTIFSSPKTQ HAKNSLALKE VISSGFFDDC 480 GWDCKQIRAV ATSSGQACGR SSWDAMSAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 31 | 134 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF175474 | 0.0 | EF175474.1 Solanum lycopersicum GAMyb-like1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016578083.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor GAMYB | ||||
TrEMBL | A0A2G3AI60 | 0.0 | A0A2G3AI60_CAPAN; Transcription factor MYB57 | ||||
STRING | PGSC0003DMT400058426 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 1e-71 | myb domain protein 33 |