PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g13230
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22167.7 Da    PI: 9.8831
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g13230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161765351
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +e+k  r+vtfskR+  ++ KA+ELS+ ++a+v ++++s++g+ y yss
  CA01g13230 17 VESKDARYVTFSKRKLSLFRKANELSTFTGADVGILLISPSGNPYSYSS 65
                799******************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-21766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.011767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-22880IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-13929IPR002100Transcription factor, MADS-box
PfamPF003193.9E-181763IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MERKTSRGRQ KIEMKLVESK DARYVTFSKR KLSLFRKANE LSTFTGADVG ILLISPSGNP  60
YSYSSTSVEK ITDKFLEWKL KNPQVVDQAG REKANVFQAF DDLREELQIM NEKEKSRKMR  120
YKILHPDSEI PVDKHRLDQL IELKLKLDAI KAAKNKILPE QFKLDLNVVP NLDEGSVLEI  180
INQCGNANCI SKI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581715.11e-130PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G3AI831e-139A0A2G3AI83_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000338616e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-19AGAMOUS-like 29