PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g13150

Common Name

HAM, LOC107867506

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 694aa MW: 76106.7 Da PI: 5.7836

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g13150	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	277.2	5.1e-85	332	692	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++++++ e + +g++++aq +Larl+++ sp g+p +R+a+y++eAL+ + + ++ lpp++ ++ + + ++ a+k fse+sP+++f ++t Nqa CA01g13150 332 DQIFQASELLLAGQFSNAQLILARLNQQLSPIGKPSRRAAFYIKEALQLPFLV--PCTSTFLPPRSPTPFDCVLKMDAYKSFSEISPLIQFMNFTSNQA 428 57899999999***********************************99998..666666899999999************************* PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLrvkp 198 Ilea+ +e++HiiDfdi+ G+QW +++q+L s ++++ l+iT+++sp+++++ e+ ++e L++fA+ g++fe +v+ ++++ + l++Lr ++ CA01g13150 429 ILEALGDAEQIHIIDFDIGFGAQWSSFMQELPSSSRKATYLKITAFASPSTHHSVEIGIMHESLTQFANDAGMRFELEVINLDSFDpkSYPLSSLRSSE 527 ***************************************************************************97776551155789999999 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 Ea+a+n+ + + l + + +s +L+++++lsPkvvv e +++++ ++ +++l+al+yy +l+ s++a + + ++k+Er ll+++i+n+ CA01g13150 528 CEAIAINFPIWSISSL--PFAFPS----LLHCMRQLSPKVVVSLECGCERTELPLKHHLLHALQYYETLLASIDAA-NLTPDIAKKIERSLLQPSIENM 619 *****9777766..566666....*****************************************655.34778999********** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + ++ ++ Wr+ +++aGF+p+++s+ ++ qa+++++++++ g++ve+++ slvl+Wk+++L+s+ Wr CA01g13150 620 ILGRLRS----PDRMPPWRNLFTSAGFSPIAFSNMTEVQAECVVKRTHVGGFHVEKRQTSLVLCWKQQELLSAATWR 692 99988....9999*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.266	304	672	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-82	332	692	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MIVIPQGNSI PAKGVLCVSN FVPSITSSSS SSQEAPIFMK DANFTRNEPV SELDTRSPSP 60 SASSSSCSYG GNTAVPGAGS WKTDGKKEEL VMELQPLTVG SDPEKSVLGF GDLDNLLPEF 120 VGSDQSFLRW ISGDVEDPSV SLKQLLNGDF GSGFEVSGTG SLVHTDANLS FSGSNICLNA 180 NIERFGTVID SNNGRNNNSF EKNLNVNPYL EQKPQVMANQ NQFQNAVCVN ILGSSPCDIN 240 QEQPLSKRHN SGALVSSLGG LLPKVPFFDA SCDFLMRKQP LGQMQQQVNL LPAQQFQPKP 300 LIVPKLEAAG GGGNGNLMVP RHQLQEQQFI YDQIFQASEL LLAGQFSNAQ LILARLNQQL 360 SPIGKPSRRA AFYIKEALQL PFLVPCTSTF LPPRSPTPFD CVLKMDAYKS FSEISPLIQF 420 MNFTSNQAIL EALGDAEQIH IIDFDIGFGA QWSSFMQELP SSSRKATYLK ITAFASPSTH 480 HSVEIGIMHE SLTQFANDAG MRFELEVINL DSFDPKSYPL SSLRSSECEA IAINFPIWSI 540 SSLPFAFPSL LHCMRQLSPK VVVSLECGCE RTELPLKHHL LHALQYYETL LASIDAANLT 600 PDIAKKIERS LLQPSIENMI LGRLRSPDRM PPWRNLFTSA GFSPIAFSNM TEVQAECVVK 660 RTHVGGFHVE KRQTSLVLCW KQQELLSAAT WRC*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MIVIPQGNSI PAKGVLCVSN FVPSITSSSS SSQEAPIFMK DANFTRNEPV SELDTRSPSP  60
SASSSSCSYG GNTAVPGAGS WKTDGKKEEL VMELQPLTVG SDPEKSVLGF GDLDNLLPEF  120
VGSDQSFLRW ISGDVEDPSV SLKQLLNGDF GSGFEVSGTG SLVHTDANLS FSGSNICLNA  180
NIERFGTVID SNNGRNNNSF EKNLNVNPYL EQKPQVMANQ NQFQNAVCVN ILGSSPCDIN  240
QEQPLSKRHN SGALVSSLGG LLPKVPFFDA SCDFLMRKQP LGQMQQQVNL LPAQQFQPKP  300
LIVPKLEAAG GGGNGNLMVP RHQLQEQQFI YDQIFQASEL LLAGQFSNAQ LILARLNQQL  360
SPIGKPSRRA AFYIKEALQL PFLVPCTSTF LPPRSPTPFD CVLKMDAYKS FSEISPLIQF  420
MNFTSNQAIL EALGDAEQIH IIDFDIGFGA QWSSFMQELP SSSRKATYLK ITAFASPSTH  480
HSVEIGIMHE SLTQFANDAG MRFELEVINL DSFDPKSYPL SSLRSSECEA IAINFPIWSI  540
SSLPFAFPSL LHCMRQLSPK VVVSLECGCE RTELPLKHHL LHALQYYETL LASIDAANLT  600
PDIAKKIERS LLQPSIENMI LGRLRSPDRM PPWRNLFTSA GFSPIAFSNM TEVQAECVVK  660
RTHVGGFHVE KRQTSLVLCW KQQELLSAAT WRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-28	336	691	25	378	Protein SCARECROW
5b3h_A	4e-28	336	691	24	377	Protein SCARECROW
5b3h_D	4e-28	336	691	24	377	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX625143	0.0	JX625143.1 Capsicum annuum cultivar Maor GRAS family transcription regulator (HAM) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311876.1	0.0	scarecrow-like protein 6
Refseq	XP_016569265.1	0.0	PREDICTED: scarecrow-like protein 6
Refseq	XP_016569270.1	0.0	PREDICTED: scarecrow-like protein 6
TrEMBL	A0A1U8GDU0	0.0	A0A1U8GDU0_CAPAN; scarecrow-like protein 6
TrEMBL	K7RXJ6	0.0	K7RXJ6_CAPAN; GRAS family transcription regulator
STRING	PGSC0003DMT400012104	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-99	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	107867506

Publications ? help Back to Top
David-Schwartz R,Borovsky Y,Zemach H,Paran I CaHAM is autoregulated and regulates CaSTM expression and is required for shoot apical meristem organization in pepper. Plant Sci., 2013. 203-204: p. 8-16 [PMID:23415323]