PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 473aa    MW: 53270.9 Da    PI: 6.4116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.76.3e-143494691374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+le+a+ +L ++s+lasp+gd+mqR+a+yf+eALa r++rs++++ykal++++     +se + + k+f+e +P+lk++ +++N
  CA01g12960  49 LIHLLLTCANHVAAGNLENANIALDQISHLASPNGDTMQRIASYFAEALADRIMRSWHGIYKALHSTKLW--MVSEDILVKKMFFEYFPFLKVASVITN 145
                 689*************************************************************999887..5999*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++    +ke le++++ L++ Ae+l++pf+f+  v+++le+l++e+Lrvk+
  CA01g12960 146 QAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLEQIAHVLTEEAEKLDIPFQFHQ-VVSKLENLDIEKLRVKT 239
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll.......................................................desvsles..erdevLklvkslsPkvvv 240
                 gEala+++v+qlh+ll                                                           s++   + d +L+++++lsPkv+v
  CA01g12960 240 GEALAISSVMQLHTLLahddeppkksplafknlnglhlqrsllnqntlgdllekdtpnvfspgnesassspL---STTAsaKMDGFLHALWGLSPKVMV 335
                 ******************************************************************986642...2222336899************** PP

        GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                 v+eq+++hn+++++er++e+l++y++lfd+le +l r+s er kvE++l+g+ei+n+vaceg er+erhe+l kW +r++ aGF++vpls++a+ qa++
  CA01g12960 336 VTEQDSNHNGTTLMERLSESLYFYASLFDCLEFTLQRTSLERLKVEKMLFGEEIKNIVACEGGERKERHEKLDKWFQRFDGAGFGNVPLSYYAMLQARR 434
                 *************************************************************************************************** PP

        GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ll+ ++ +gy+++ee+gs+v++W+drpL+svSaWr
  CA01g12960 435 LLQSYSCEGYKIKEERGSVVICWQDRPLFSVSAWR 469
                 **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.94923449IPR005202Transcription factor GRAS
PfamPF035142.2E-14049469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPLQNFS MISSLSPGFG GSPYQWLKEL KSEERGLYLI HLLLTCANHV  60
AAGNLENANI ALDQISHLAS PNGDTMQRIA SYFAEALADR IMRSWHGIYK ALHSTKLWMV  120
SEDILVKKMF FEYFPFLKVA SVITNQAIIE AMEGEKMVHI VDLNASEPLQ WRALLQDLSA  180
RPEGPPHLRI TGVHQQKEVL EQIAHVLTEE AEKLDIPFQF HQVVSKLENL DIEKLRVKTG  240
EALAISSVMQ LHTLLAHDDE PPKKSPLAFK NLNGLHLQRS LLNQNTLGDL LEKDTPNVFS  300
PGNESASSSP LSTTASAKMD GFLHALWGLS PKVMVVTEQD SNHNGTTLME RLSESLYFYA  360
SLFDCLEFTL QRTSLERLKV EKMLFGEEIK NIVACEGGER KERHEKLDKW FQRFDGAGFG  420
NVPLSYYAML QARRLLQSYS CEGYKIKEER GSVVICWQDR PLFSVSAWRC RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-43334712380Protein SCARECROW
5b3h_D4e-43334712380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557062.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8FCM20.0A0A1U8FCM2_CAPAN; Scarecrow-like protein 3
TrEMBLA0A2G3AHW30.0A0A2G3AHW3_CAPAN; scarecrow-like protein 3
STRINGXP_009793219.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]